Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3081 ATGCGTAGCATTCAAGTTGAAGCCAAGCAAAAACATGGTGTTGAATATTTCAAGTACTCATCTTCTCAACCTCCTTTCTCTTCATTCCAAACTCCTAGTGATGGTAACATCAGTAACGAGAACGAAGCAACAACAACATCATCATCATCACCATCATCTCTTAGCAGAATAAGTCCACTTATTTTGCTGGTTATAATAGTTCTAGCAGTTATCTTCTTTGTCTATGGACTTGTCCATTTGGTTCTGTGGTTTCTGATGAAAAGGCCAACCCCTCAGTCTCTCTACAATTCAAATAATTTCACAGAAGCCACAAGAACGCGTGCTCTTCAAAGACAGCTTCAACAGCTCTTTCGTTTGCATGATTCAGGTTTAGACCAAGCTCTCATAGATGCTCTACCTGTTTTCTATTACCACGATTTATTGGGTTTGAAGGAACCCTTTGATTGTGCTGTGTGTCTCTGTGAATTTTCCGACCAAGACAAGCTAAGATTGCTTCCTATGTGCAGCCATGCCTTTCACATGAATTGTCTTGACACGTGGCTACTGTCAAATTCCACGTGTCCTCTTTGTAGGGCATGTCTCTCCAACTCTGGTTTCTACGTGGAGAATCCAATATTTAATATTGATAATTCTTTGGTGATGCCTAATAGGCTCATGGATGAGGAAGAAAATGGGTGTTCAGATAGTCAAAGATCAGTAACTGGTGAAGCACAAATAAGTGGGAAAAGGGTGTTTTCTGTCAGACTTGGAAAATTTAGAAATAATGGGTTGGAGGGTGGAGTGGTAGGAGGAGTAATAGGGGATAGTAGTAGTTGTAGTTTGGATGAGAGGAGATGCTACTCCATGGGTTCATATCAGTATGTAGTTCGTGATTCAAATTTGCAAATTGTGTTATCTCAATCTCATGATGTTTTAGAGCATGGAAATGTCGAGGGAAAAAGGATAGGCAACTCAACACAAGGTGAGAGCTTCTCTGTTTCCAAGATCTGGCTTTGGTCCAAGAAGACCAAGTTTCATAGTTCTAATGCTGCTTTCCCTTGA 1041 0.4054 MRSIQVEAKQKHGVEYFKYSSSQPPFSSFQTPSDGNISNENEATTTSSSSPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFLMKRPTPQSLYNSNNFTEATRTRALQRQLQQLFRLHDSGLDQALIDALPVFYYHDLLGLKEPFDCAVCLCEFSDQDKLRLLPMCSHAFHMNCLDTWLLSNSTCPLCRACLSNSGFYVENPIFNIDNSLVMPNRLMDEEENGCSDSQRSVTGEAQISGKRVFSVRLGKFRNNGLEGGVVGGVIGDSSSCSLDERRCYSMGSYQYVVRDSNLQIVLSQSHDVLEHGNVEGKRIGNSTQGESFSVSKIWLWSKKTKFHSSNAAFP* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3081 346 Pfam Ring finger domain 148 191 IPR001841 -
Apr9g3081 346 CDD RING-H2_PA-TM-RING 148 191 - -
Apr9g3081 346 SMART ring_2 149 190 IPR001841 -
Apr9g3081 346 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Apr9g3081 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 346 - -
Apr9g3081 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 198 IPR013083 -
Apr9g3081 346 SUPERFAMILY RING/U-box 128 196 - -
Apr9g3081 346 MobiDBLite consensus disorder prediction 21 54 - -
Apr9g3081 346 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3081 Apr-Chr9 37618498 37619855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3081 55 343 C3H Transcription Factor Family AT2G18650 41.994 2.38e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3081 - - aprc:113846147 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3081 9 37618498 37619855 Apr9g3081 9 37618498 37619855 ECH