Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g3073 | ATGGCATCATTTGGAGGCACTACCCAGAAGTGTAAAGTATGTGAAAAGAAAGTGTACTGGGTGGAACAGCTCACTGCTGATAGCATTGTGTATCACAAGTCTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTAGGTAATTATTGTTCCTTTGAGGGTGTTCTATACTGTAAGCCTCACTTTGATCAACTATTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTAGAAAGATCTGCTGATCAGGTCCAGAGCAACAAGGTTTCAAGGCTGTTTGCTGGAACTCAGGAAAAGTGTGTTGGTTGCCAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGCAAATCTTACCATAAGTCTTGTTTTAGATGTACTCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCCCATGAACATCGTCTTTATTGTAGACACCACCACACTCAACTCTTCAAGCAAAAGGGTAACTTTAGTCAATTAGACAAGCATGAAACTGTTGTCCAACTAAAGACTGAGAAACAACATCCCAATAATGCCAATACAAGTCCAGATGATGACTCTTTTTAG | 609 | 0.4105 | MASFGGTTQKCKVCEKKVYWVEQLTADSIVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVQSNKVSRLFAGTQEKCVGCQKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHETVVQLKTEKQHPNNANTSPDDDSF* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g3073 | 202 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 197 | - | - | |
| Apr9g3073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 173 | - | - | |
| Apr9g3073 | 202 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Apr9g3073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Apr9g3073 | 202 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
| Apr9g3073 | 202 | PANTHER | OS06G0237300 PROTEIN | 1 | 197 | IPR045268 | GO:0051015 | |
| Apr9g3073 | 202 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Apr9g3073 | 202 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Apr9g3073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 36 | - | - | |
| Apr9g3073 | 202 | CDD | LIM1_SF3 | 7 | 68 | - | - | |
| Apr9g3073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Apr9g3073 | 202 | Pfam | LIM domain | 109 | 164 | IPR001781 | - | |
| Apr9g3073 | 202 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Apr9g3073 | 202 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Apr9g3073 | 202 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Apr9g3073 | 202 | Gene3D | Cysteine Rich Protein | 103 | 173 | - | - | |
| Apr9g3073 | 202 | Gene3D | Cysteine Rich Protein | 6 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr9g3073 | Apr-Chr9 | 37550009 | 37552923 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Apr9g3073 | LIM | 2.5e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr9g3073 | K09377 | - | gmx:100792627 | 374.015 |
Event-related genes