Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3064 ATGGCTTCCTCTTCCGCGTTCTCAGATCCTCCTCCTTCCAGACACCACACTTACAACCGAAAACAAAAATCCCTAGGCCTCTTGTGCACTAATTTCTTGGCTCTGTACAATCGAGACTCTGTTCACTTGATTGGCCTCGACGATGCCGCATCCCGGTTAGGTGTTGAGAGAAGACGGATCTACGACATAGTCAACGTTTTAGAGAGCATCGGGGTGCTTTCCAGAAAAGCTAAAAATCAGTATACGTGGAAGGGGTTTGACGCAATTCCCGTCGCACTTCAGGAGCTCAAGGAAGAGGGGTTGAAGGAGAACCCTAATGTCTTGGACGGCGGCAGTGACAATGGAAAAGTGTCCGATGACGAGGACGAAGATGAAACATCGTCCAATCTCGCTACTGGAAGCCAAAATGACAAGTTGAACTCTGATCCTGCTCTTCCCAAACCTCTGAAAAACGATAATAGAAGGGAAAAATCTCTGGCGTTGCTTACTCAAAATTTTGTCAAGCTCTTTGTGTGCTCTAATTTGGAAATGATCTCTCTGGATGAGGCCGCAAAATTATTGCTTGGGGATGCCCATAATTCATCAATAATGAGAACAAAAGTCAGGCGCCTATATGATATTGCAAATGTGTTATCCTCCATGAATCTTATTGAGAAGACTCACACAGCAGATTCAAGAAAACCAGCATTCAAATGGCTGGGCTTGAAAGGGAAGACATGGAATGAGTCACTTAACAATTCAATTTTGAACGAGTCTAGGAAAAGGGCTTTTGGAAATGATATAACAAACATCAGTTTTGAGAGGAACAAATCGGATTTATTAATAAATGGAGACTTAAATCGCAATCCTAAGAAGCAAAAAAACTTGGAAAATGATAGTGGCTTCGGTCAGGCAGACAAAAGCAATTTAAAGCAAGGCTCAAAACAGACTTTAAGGAACTATCAATTTGGACCTTTTGCTCCATCTTCTGTGCCAAAAGTTGGGACCTCTGAGAATAATAATATGAAACAGGCGCGTGACTGGGAGAGTCTCGCAACTGCACATTGTCCTCAGTATCAAAACAAAGCTTTAAAAGAGCTCTTCTCCCATTACATGGAAGCATGGAAATCGTGGTACTCTGAGATTGCTGGGAAGTAA 1137 0.4274 MASSSAFSDPPPSRHHTYNRKQKSLGLLCTNFLALYNRDSVHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFDAIPVALQELKEEGLKENPNVLDGGSDNGKVSDDEDEDETSSNLATGSQNDKLNSDPALPKPLKNDNRREKSLALLTQNFVKLFVCSNLEMISLDEAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADSRKPAFKWLGLKGKTWNESLNNSILNESRKRAFGNDITNISFERNKSDLLINGDLNRNPKKQKNLENDSGFGQADKSNLKQGSKQTLRNYQFGPFAPSSVPKVGTSENNNMKQARDWESLATAHCPQYQNKALKELFSHYMEAWKSWYSEIAGK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3064 378 Gene3D - 15 87 IPR036388 -
Apr9g3064 378 Gene3D - 148 236 IPR036388 -
Apr9g3064 378 MobiDBLite consensus disorder prediction 102 151 - -
Apr9g3064 378 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 374 - -
Apr9g3064 378 PANTHER TRANSCRIPTION FACTOR E2F 1 374 IPR015633 GO:0000978|GO:0006357
Apr9g3064 378 MobiDBLite consensus disorder prediction 277 302 - -
Apr9g3064 378 SUPERFAMILY "Winged helix" DNA-binding domain 156 235 IPR036390 -
Apr9g3064 378 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Apr9g3064 378 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Apr9g3064 378 SUPERFAMILY "Winged helix" DNA-binding domain 19 83 IPR036390 -
Apr9g3064 378 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
Apr9g3064 378 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3064 Apr-Chr9 37449852 37453290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3064 15 376 E2F-DP Transcription Factor Family AT3G48160 59.459 3.28e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Apr9g3064 E2F_TDP 7.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3064 K09391 - gmx:100795252 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3064 9 37449852 37453290 Apr9g3064 9 37449852 37453290 ECH