Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3054 ATGTCTCCCGCCAGCACCGCAGCTGACTCCGCCGTCTCCGGCGAGATCATGCTGTTCGGAGTTAGGGTCGTGGTTGATTCGATGAGGAAGAGCGTGAGTATGAACAATCTCTCACAGTACGAGCATCCTCAAGACGCCAACAACAGCAACAATAGCAGCAACAAAGACGTCGCCGCCGGTTACGCCTCCGCCGATGACGCCGTTCCTAATAACTCCGGCCGACATCGCGAGCGCGAGCGTAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGCAAGTAGGAAAGGGAGATTGGAGGGGAATCTCCAAGAACTACGTGAAAACCCGAACACCAACACAGGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGGCGGAGTAACCTCAATCGCCGTCGTCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTTTCTGTGAACCCAATGGAGGAAGAACAGGCCCAGAATCAAGACAGCGTGTCTCATTCACAGCCTGTGTTCCCTGCAGTCCCTGAAACTAGCAAAATCAATGGATTTCCAATGATGCCAGTATATCAGTTGGGTGTTGGTTCTGGAATGATCTCGGTCCAATCTGACAATAAAATGGAAGAACTCACTCTGGGACAAGGAAACATGGAACGCAATGTGCCAACCAAGCTAGTCCGAGCAATTCCTGGTGTTCCAGATCCTAGAGCTTCCACAGTGTCTGATATCAATGCTCCCAGTTCTAGTTCAGCTGTTGAGCCACCAACACTCTCCCTCGGGCTATCCTTCTCATCTGATCAAAGGCAGACATCATCAAGACATTCAGCTTTACATGCAATGCCGTGTTTCAACAATGGGGATAGCATCATTAGTGTTGCTTGA 894 0.5112 MSPASTAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDANNSNNSSNKDVAAGYASADDAVPNNSGRHRERERKRGVPWTEEEHKLFLVGLQQVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSVNPMEEEQAQNQDSVSHSQPVFPAVPETSKINGFPMMPVYQLGVGSGMISVQSDNKMEELTLGQGNMERNVPTKLVRAIPGVPDPRASTVSDINAPSSSSAVEPPTLSLGLSFSSDQRQTSSRHSALHAMPCFNNGDSIISVA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3054 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Apr9g3054 297 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Apr9g3054 297 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Apr9g3054 297 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 297 - -
Apr9g3054 297 PANTHER KIN2 13 297 - -
Apr9g3054 297 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Apr9g3054 297 MobiDBLite consensus disorder prediction 233 277 - -
Apr9g3054 297 MobiDBLite consensus disorder prediction 40 84 - -
Apr9g3054 297 MobiDBLite consensus disorder prediction 40 58 - -
Apr9g3054 297 CDD SANT 85 130 IPR001005 -
Apr9g3054 297 Gene3D - 86 134 - -
Apr9g3054 297 MobiDBLite consensus disorder prediction 244 277 - -
Apr9g3054 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Apr9g3054 297 ProSiteProfiles SANT domain profile. 81 134 IPR017884 -
Apr9g3054 297 MobiDBLite consensus disorder prediction 70 84 - -
Apr9g3054 297 SMART sant 82 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3054 Apr-Chr9 37336019 37338213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr9g3054 Myb_DNA-binding 6.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3054 - - gmx:778059 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3054 9 37336019 37338213 Apr1g0869 1 11611592 11614381 PCT