Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3051 ATGGAACCTCCCCTCATCAACGACTCCACATTCTCCTCCGATAACCCTTCCTTGTCCGAGATTTGGCCCACTCCTCCCCACACTCCCAATCGCCGCAAGAGGAACAATCTTCTCCCTCCCACTCTTCACTCGCTGAATCACTCTGCCTCCAATAAACATATCAAGTTAGCAGACCAAAACGCTGCGTTCAAACTCCAAGCTGATGCCACCTCCGTAGCCGGTAACAAGTCACCTCAACCAACCGCTAAACCTTCTGAGCAATCACCACCTAAGCAAGACTATATACACGTGAGAGCCAGAAGGGGACAAGCTACCGATAGCCACAGTCTCGCCGAGAGAGCTAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTTCCCGGATGCAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATTAACTATATCCAATCACTGCAGCGCCAGGTTGAGTTTCTTTCAATGAAGCTTGAGGCAGTTAATTCGAGGTTGAACATGAGCCCTAATATTGAATGTTTTCCTTCAAAGGATGTTGGTACTCAGCCATTTGACCTTGCTGGAATAATATTTGGATCACAAGCAGCCAGGGGATACGCTCAGGGATCACAGCCAGGATGGTTGCATATGCAGATAGCTGGTGGTTTTGAAAAAACAACATAG 681 0.467 MEPPLINDSTFSSDNPSLSEIWPTPPHTPNRRKRNNLLPPTLHSLNHSASNKHIKLADQNAAFKLQADATSVAGNKSPQPTAKPSEQSPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNMSPNIECFPSKDVGTQPFDLAGIIFGSQAARGYAQGSQPGWLHMQIAGGFEKTT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3051 226 CDD bHLH_AtBPE_like 93 176 - -
Apr9g3051 226 Coils Coil 150 170 - -
Apr9g3051 226 MobiDBLite consensus disorder prediction 71 91 - -
Apr9g3051 226 Gene3D - 100 177 IPR036638 GO:0046983
Apr9g3051 226 PANTHER BNAC05G07950D PROTEIN 46 226 - -
Apr9g3051 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 46 226 IPR024097 GO:0006355
Apr9g3051 226 Pfam Helix-loop-helix DNA-binding domain 107 154 IPR011598 GO:0046983
Apr9g3051 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 153 IPR011598 GO:0046983
Apr9g3051 226 SMART finulus 109 159 IPR011598 GO:0046983
Apr9g3051 226 MobiDBLite consensus disorder prediction 1 58 - -
Apr9g3051 226 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g3051 226 MobiDBLite consensus disorder prediction 29 55 - -
Apr9g3051 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 173 IPR036638 GO:0046983
Apr9g3051 226 MobiDBLite consensus disorder prediction 71 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3051 Apr-Chr9 37304230 37307831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3051 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 45.936 2.21e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g3051 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3051 - - gmx:100799646 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0872 1 11650457 11654089 Apr9g3051 9 37304230 37307831 ECH
Apr9g3051 9 37304230 37307831 Apr9g3051 9 37304230 37307831 ECH