Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3042 ATGGGGCACAAAAAGCGAAACCCTCCTCCGCGCTCCAAACATTCTCCGGCGGCTTCTCCGGCGGCGCAATCCGTCGTCGGTGGAGCCGCCAATGGTGTCGCCTCGCTGGACGCTGACTCCTGCAATGTTTCCGATCACAATTTTCATAACCCTAGCAAGATCGAATTGGTCTCTCCCCAATCCGAGGGTTCCGATTACTCAACAATCAAGCTCGAGTGCGAGCGTGCCCTCACTACGTTTCGACGTGGGAACCACACCAAGGCAATGAAGCTCATGAGGGAACTCTGCGCCAGAGAGGAGGGTTCGTTGCACGCCGCGTTCCTTCATCGAGTGCACGGATTCGTGTGTTTCAAAACCGCCACGATTATCACTGACCCGAGCTCGAAGCAGCGGCATTTGAAGAATGCTCTGGAATCAGCGCGGAGAGCCGTCGAGCTCACGCCAAATTCGGTTGAGTATGCGCATTTCCATGCCAGTGTGATGCTGGAGGCTGCAAGTGAAGGGAAGGATTATGAGGAGGTCGTGCACGAGTGTGAGAGGGGGCTCGCCATCGAGAATCCCAATGATCCTGCCAAGGAGACATTGCAGGATGAAAGTGAGCAGAAAGTGTCGACGCTGGAAGACCGAGTTGCGCACGTGCAGAATGAGTTGAGGCAGCTTATTCAGAAGTCGAATATAGCTTCGTTGTCCTCTTGGATGAAGAATCTGAGTAATGGGGAGGAGAGATTTCGGTTGATTCCGATTAGGAGGACGACGGAGGACCCTATGGAGGTGAGGTTGGTTCAAGCTAGAAGGCCTAACGAGATCAAGAAGGTGACTAAGACGCCCGAGGAAAGAAGAAAAGAAATTGAAGTTCGAGTCGCAGCTGCGAGGCTGCTGCAGCAGAAGTCTGAGTCACCCCAATCTCCCAATGAAGGAGATAGGGATGATAGACCGTTGGATTCCTCTTTGGGCTCTGGTCAGAGGATAGGTGATAGGCGGCGGCATGGGAATGTGAGAAAGAATGGCTTTACTGCTGAAAGGAGGAAGTGGGTTCATTCGTATTGGAATTCAGTGAGTATGGATATGAAGAAGGACTTTCTTCGGGTTAAAATTTGTGATCTCAAATCCCATAATGGTTCTTCAAAGGATACTTTGCCAAATGATATTTTATCAGAAGCTTTGTCTTATGCTGAGGCCAATAAAACCTGGAAATTTTGGCTTTGCTGCAATTGTGAAAAGAAATATTCCAACCCGGATGCTCACCGGCACCATGTTGTGCAGGAACACATGGGGAGTCTGTCGCTAAAAATGCAGAGACTTCTCCCCCAAAATGTTGACAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATGTCTCAGCTGCAGTTAAAATGCTGGATAATAAAGTAAAGTTCAAAAGTTCACCATTTCCTGAGGAATTGTACTTGGGCCATCATGCTCAGGACTACAATGATTGTTTTAAAGATGCAAGCAGCTCTTACATCGAGAAGGAAAGTTTAGGGGACAGTCTTCGTAATTATAGTGCAGAATGCAGTAACCATTGTAAAGTTATAGAAAATGATGTCGGAGAAGGTGATCAAGACCAGCTGTCTATGGCAAATCCCACTGCAGATTGTTGGCCGGTATCTGATGATTCAGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGATTCTTATTAGGCACAAGTGTCTTGCTGCCAGCCATCTTAACAAGGTCATACAGTTTACTATGGGTGAGATACAGGGTCTTGCTGCTGGTTCTCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTCCACAGCTTAAGAAAATTCTCCAATTTCTGCAGGAAATATCTCATGCATGTGGGTTGGCTAGATATGCTGAGAAAGGTAGTAGTCCCACAAATGAATTACATAATATTGATCAAGGTCCTGAGATTAAAGACAAGATTGTTTTTGATGGAGATGCATCACGCCTCCTTCTGGATGAGTGTTTACTGCCAACACAAGTCACTTCTGGTACAGCTCCGGGGGATGTCTTGAATGATGTTACCACCCCAAGCTCTCCTGATGGAATTTCATTCTATAATGATGCTTTGCTATCCTGGATATTTTCAAGCTCTCCTATTGGGGATCAATTGACATCATGGTTACGGACTGGAGAAGATCAAATAAATAAAGGAAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATCACCTGCAGAGCCTGTGTGAGAAGAAGGGTGAACGTATAAGTTATGAGGAAGCACTACAAACTGTAGAGGATCTTTGTCTCGAAGAAGGTAAGAAGAGGGAAAATGTTGGTGAATTTGTCCAGCGAAGCTACGAATCTGTCTTAAGAAAGCAAAAAGAAGAGCTCATTGAAAGTGAGAATGATATGATGTATGTCAGCAACAGGTTTGAGTTGGAGGCTATATCAAATGTTTTGCAAGAAGCAGAGGCAATGAATGTTAATCAGTTTGGCTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACCTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGGTGTATAGAAATTGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAATGTTGCGGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTCCGGGCGCTTTTGGAAGATTTGGCTGAGAAAGATGCCAGAGAAAAGTCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGGTCGTTAAGGGGGGAAGTGAGAGCACAAGACATGTTGAGAAGACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCACAGCTGGTCAGGTGCAGCTCTCATTTCAATCTACAACTCCAGATTCCAATCTAGTTGCAACTGAAAGTGACTTCCAAGATCACGAGGTTGTTTCTAGGAATGGGGATGACTTGGAACAACTTGAAGCAGAATTTAGACGCAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAAAGAAGGATAGAGAATGAAGCCAAACAGAAGCACCTTGCTGAGCAGCAAAAAAAATCATCGGGGACATACATGGAGGAAGTGGATGACAAACTTCAAGATTCTCAAAGGAAGGCAGTTGCTGGTCACCCAGATGTGCATGAACATGTAAGACTACCAGTGCAGGAGCAATTGGCAAAGGAGAATGGGTCCCCAAGCAATCTGGATGGCCTGTTTATACCCACAGCAAATGGTTCCATGCTTAATTATTTGCATCAGTCAAAAGTTAAACAAGATCTGCCTAATGGAGTTGTTCCAGAGGATGGTCTACCTTTGCCTGATCGGCGTGGTGGAAAAAAACATAAACGGCATAAGAATTCTTCCAGAACAGTTGATGGAAAGTTGGAATCTGTCTCAGTGGAAAAGGAAAATACTGAGGATACACATACTGATTATTACTCAAGAGAGCAATTCAAATTTAATAACAGTCAAGATACTGACAGGGAGTGGGAAAACAATGGATCAAAGGCTATGAAAGAGTTAAAAGTGGAAGACGAGGAGGAGGAAAGATTCCAGGCCGATCTCAAAATGGCTGTACGCCAAAGCCTGGACACATATCAGGCACGTGGAAATTTGCCTCCGGTTTCCAGTTTAAGAATGTCACACAGAGCTTCTTCACAGGTAGATAATGTGGATTTTCTACCAGTGGAAAACTCAACTGAGAATGTGAATGGAGCTACCTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGTGTTGTCTGTTCATTGTATGAAATCTTTACTGCACTGGATCTTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCTCCTACATCCCTGCGGATAGCTCTAAGCAACTTATATCCAGACAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTATTAGGAGTGATATTTGACTGCCTTCATCGATCATTTACCCGTGGCTCAACTGTTTCTGATGCAGAATCAGTTGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAATTGCCATCACTGTGGTCTTGAATCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTCCGCACAATGAAGGTAATGTTTCCTGAAAGCTCCTTTGATAAGCTTTTGAATCTTGTGGAGATGAACCATCAGTTGACTTGTGATCTAGAAGTTGGTGGTTGTGGGAAGCTCAACCACATCCATCACTTTCTTTCAACTCCGCCGCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAATGCTGATGATATAACTGCAACTCTGGGAGCCTTGAGCACCCAGATAGATATCAGTGTCCTTTATCGTGGTTTAGATCCTAAAAGCATCCATAACTTGGTGTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCATGATCATGAACAATGGATTATGTATGATGACAAGACTGTCAAGGTAATTGGTGGGTGGGCTGATGTTCTTGCAATGTGTGAAAGAGGGCATTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4917 0.4369 MGHKKRNPPPRSKHSPAASPAAQSVVGGAANGVASLDADSCNVSDHNFHNPSKIELVSPQSEGSDYSTIKLECERALTTFRRGNHTKAMKLMRELCAREEGSLHAAFLHRVHGFVCFKTATIITDPSSKQRHLKNALESARRAVELTPNSVEYAHFHASVMLEAASEGKDYEEVVHECERGLAIENPNDPAKETLQDESEQKVSTLEDRVAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTTEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSPNEGDRDDRPLDSSLGSGQRIGDRRRHGNVRKNGFTAERRKWVHSYWNSVSMDMKKDFLRVKICDLKSHNGSSKDTLPNDILSEALSYAEANKTWKFWLCCNCEKKYSNPDAHRHHVVQEHMGSLSLKMQRLLPQNVDSEWIEMILNCSWKPLDVSAAVKMLDNKVKFKSSPFPEELYLGHHAQDYNDCFKDASSSYIEKESLGDSLRNYSAECSNHCKVIENDVGEGDQDQLSMANPTADCWPVSDDSERAKLLEKIHAVFEILIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGAPQLKKILQFLQEISHACGLARYAEKGSSPTNELHNIDQGPEIKDKIVFDGDASRLLLDECLLPTQVTSGTAPGDVLNDVTTPSSPDGISFYNDALLSWIFSSSPIGDQLTSWLRTGEDQINKGKEIVQMLEKEFYHLQSLCEKKGERISYEEALQTVEDLCLEEGKKRENVGEFVQRSYESVLRKQKEELIESENDMMYVSNRFELEAISNVLQEAEAMNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRNVAEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKVVKGGSESTRHVEKTKDKKKNKDHRKARDLKATAGQVQLSFQSTTPDSNLVATESDFQDHEVVSRNGDDLEQLEAEFRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGTYMEEVDDKLQDSQRKAVAGHPDVHEHVRLPVQEQLAKENGSPSNLDGLFIPTANGSMLNYLHQSKVKQDLPNGVVPEDGLPLPDRRGGKKHKRHKNSSRTVDGKLESVSVEKENTEDTHTDYYSREQFKFNNSQDTDREWENNGSKAMKELKVEDEEEERFQADLKMAVRQSLDTYQARGNLPPVSSLRMSHRASSQVDNVDFLPVENSTENVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGNPCVVCSLYEIFTALDLASKDSRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHRSFTRGSTVSDAESVESNCMGSWDCANGSCIAHSLFGMDIFEQMNCHHCGLESRHLKYTSFFHNINANALRTMKVMFPESSFDKLLNLVEMNHQLTCDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCENADDITATLGALSTQIDISVLYRGLDPKSIHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLAMCERGHLQPQVLFFEAVN* 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3042 1638 ProSitePatterns Zinc finger C2H2 type domain signature. 402 423 IPR013087 -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 1154 1202 - -
Apr9g3042 1638 Pfam Ubiquitin carboxyl-terminal hydrolase 1306 1613 IPR001394 GO:0004843|GO:0016579
Apr9g3042 1638 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Apr9g3042 1638 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1638 - -
Apr9g3042 1638 CDD Peptidase_C19 1396 1635 - -
Apr9g3042 1638 Pfam Protein of unknown function (DUF629) 345 877 IPR006865 -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 1183 1202 - -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 292 334 - -
Apr9g3042 1638 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1305 1637 IPR028889 -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 1 26 - -
Apr9g3042 1638 SUPERFAMILY Cysteine proteinases 1305 1635 IPR038765 -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 970 1000 - -
Apr9g3042 1638 Gene3D Tetratricopeptide repeat domain 65 218 IPR011990 GO:0005515
Apr9g3042 1638 Coils Coil 1032 1072 - -
Apr9g3042 1638 Gene3D Cysteine proteinases 1291 1636 - -
Apr9g3042 1638 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1638 - -
Apr9g3042 1638 MobiDBLite consensus disorder prediction 302 334 - -
Apr9g3042 1638 Coils Coil 196 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3042 65 1635 C2H2 Transcription Factor Family AT3G47890 56.803 0.0 1726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3042 - - gmx:100799759 2714.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3042 9 37221828 37230640 Apr9g3042 9 37221828 37230640 ECH