Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3033 ATGGGTTCAAGATCGATGGTGAGTTTTGAAGATGTTAAAGGAGGGAAGGGGTGTAACAGGTCGTTCTTTGGCGCATTTGATGTGGACGAAAACGGGGATGATGGTATGGACGAATACTTTCATCAACCGGAGAAGAAGCGGCGTCTCTCTGCGGACCAAGTTCAGTTTCTTGAGAAAAGCTTCGAGGAGGAAAACAAGCTCGAACCCGAGAGAAAAACTAAGCTAGCCAAGGACCTTGGTTTGCAGCCACGACAAGTTGCTATTTGGTTCCAGAATCGTCGAGCAAGGTGGAAGACAAAACAGCTTGAAAAAGATTATGAGTCTCTGCATGCTAGCTTCGAGACTCTTAAGGCCAGTTATGATAACCTCCTCAAGGAGAAAGACAAGTTAAAAGCTGAGGTGACAAGCCTCACGGAAAAGGTGCTTGCAAGAGAGACACGAGAGGGGGGATTTAAGCAAGGTGAGAGTGAAACAAAGGGGTTGCAAGAACAACCCGAAAAACCTTTGCTTGATTCAGTTTCAGAGGGTGAGGGATCCAAAGTCTCAGTTGGGGGTTGTAAACAGGAAGATATTAGTTCAGCAAGGAGTGACATTTTGGATTCTGATAGCCCACATTACACTGATGGAGTTCACTCTGCACTGCTAGAGGCAGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGACTTATCACAAGATGAAGAAGACAACTTCAGCCAGAGCCTGTTGCCTCCATATATCTTTCCTAAGCTTGAAGATGTGGACTACACCGACCCACCTGAAAGTTGTAATTTTGGATTAACGGAGGAAGATCATGCCATTTGGACTTGGGCATTCTAA 843 0.4531 MGSRSMVSFEDVKGGKGCNRSFFGAFDVDENGDDGMDEYFHQPEKKRRLSADQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHASFETLKASYDNLLKEKDKLKAEVTSLTEKVLARETREGGFKQGESETKGLQEQPEKPLLDSVSEGEGSKVSVGGCKQEDISSARSDILDSDSPHYTDGVHSALLEAGDSSYVFEPDQSDLSQDEEDNFSQSLLPPYIFPKLEDVDYTDPPESCNFGLTEEDHAIWTWAF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3033 280 MobiDBLite consensus disorder prediction 145 164 - -
Apr9g3033 280 Coils Coil 113 140 - -
Apr9g3033 280 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Apr9g3033 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 18 277 - -
Apr9g3033 280 Pfam Homeodomain 45 98 IPR001356 GO:0003677
Apr9g3033 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 277 IPR045224 GO:0003700
Apr9g3033 280 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Apr9g3033 280 MobiDBLite consensus disorder prediction 145 187 - -
Apr9g3033 280 SUPERFAMILY Homeodomain-like 32 102 IPR009057 -
Apr9g3033 280 SMART HOX_1 43 104 IPR001356 GO:0003677
Apr9g3033 280 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Apr9g3033 280 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Apr9g3033 280 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Apr9g3033 280 CDD homeodomain 45 101 IPR001356 GO:0003677
Apr9g3033 280 Gene3D - 95 143 - -
Apr9g3033 280 Gene3D - 48 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3033 Apr-Chr9 37132657 37135165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3033 2 212 Homeobox Transcription Factor Family AT3G01470 45.833 2.73e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr9g3033 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3033 - - gmx:100799054 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3033 9 37132657 37135165 Apr9g3033 9 37132657 37135165 ECH