Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3022 ATGGAGCTTGCTTCGGAGAGATCTGGTGACGGAGGTGGTGGACTCAAGGAAGAAAAGAGAAGTGAGTATAGTGTTGGTGATGAGGAAGGTCGTCATAAACAAGAGACTATTGTTGAGGATGAGCCACCCATTGCTAATACCGAAAGATTCACACTGGAGGCTGGACCAAGCACATCGTCAAGCAAAAAGGAAGAGGTTGATGATCAGATTGAGACTACTAAAGCCGAAATGAGCGAAGTGCAAGAAGAAAATCAACGGCTAAAGATGTCTTTGAACAAAATAATGAATGAATATCGGACACTAGAAAGGCAATTTCAAGATATAGTTAAGCAAGGAACAAAAAAGAATGATGATAAAGGAAATGGTAACCATCAAGAAATAATAGAGGAATCAGATCTTGTTTCCCTCAGTCTAGGAAGAGTTCCGAGTAATCCAAAAAATGATGAGAAATCCAAAGTTTCTAAACCAATGAAGGATGAAGGGTTTAACGAAGAGTTGACTCTTGGACTAGATTGCAAATTTGAAACATCAAAATCGGGAAGCACTAGCGAAGCTTTGGCAGATCCAAGTCCAGCAAATAGCTCTGAAGTGCCGAAAGAAGAAGCTGGGGAGACTTGGTCACCCACTAAGGGAGTCAAGACAACGAGAGATTCAGAGGACGAAGTTGCTCACCAAAATCCTACCAAGAAAGCTAGAGTTTGCGTCAGAGCAAGATGTGACACTCCAACAATGAACGATGGATGTCAATGGAGAAAATACGGACAAAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCAGTAAGAAAACAGGTGCAAAGATGTGCTGAGGACATGTCCATTTTAATCACCACCTACGAAGGGACTCACAATCACACTCTTCCACTTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCTGCTTCCATGTTGTTGTCTGGTTCATCAAGCTCTCTCTCTGGATCAATACCTTCAACAACCACCACTGCTCCTAATACTCTCCATGGCCTCAACTTTTATCTCTCAGATGGTTCCAAATCAAGGCAATTATACCTGTCCAACCCTGCACTATCATCTTCACCTTCACATCCAACCATCACTCTTGACCTCACTTCAAACCCATCCTCTTCCTCATCATCCCCTTTTGTTAGATTCACTTCAAGCTACAACCAACCCAGGTACCCTTCTTCCACAAGCCTCAGCTTCAGTTCCTCCGATTCCAATGCAATGTCTTGGAGCAACGGGTTCCTCAACTATAGTACTCAACCATATAATAACAACAATAGTAATAATAAGAGTAATAACCTTAGCACTTTAAACTTTGGAAGACAACAAATGGAAAATATCTACGAATCCTACATGCATAAGAACAGCAACTCAACCGTCCCTCAAGGCGCTCTACCAGATACTATATCTGCAGCAACCAAAGCGATCACAGCAGACCCAACTTTTCGATCTGCTTTGGCAGCAGCACTTACTTCATTTATTGGGGCGCAAGGTAGCATTGGAAGCACGCAAGGAAATCAAAGTGTTGGAGAAAATTCAAGTCAGAAAATGAAATGGCCAGAGGCTTTTCCTGTGTCTAATTCTACTTTGTCTTCTTCAAATTCCAAAGTCAATGGTTGTGCATCAAGCTTCTTGAACAAAACGCCAGCAAATACACAGACCACAAGTTTGATGCTTCTACCACCGTCTACTTTGCCGTTTCCTACCTCCAAAAGTACTTCTGCATCTCCTGCGGAAAATAGCGACACTACCAGTTAA 1797 0.429 MELASERSGDGGGGLKEEKRSEYSVGDEEGRHKQETIVEDEPPIANTERFTLEAGPSTSSSKKEEVDDQIETTKAEMSEVQEENQRLKMSLNKIMNEYRTLERQFQDIVKQGTKKNDDKGNGNHQEIIEESDLVSLSLGRVPSNPKNDEKSKVSKPMKDEGFNEELTLGLDCKFETSKSGSTSEALADPSPANSSEVPKEEAGETWSPTKGVKTTRDSEDEVAHQNPTKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSSSLSGSIPSTTTTAPNTLHGLNFYLSDGSKSRQLYLSNPALSSSPSHPTITLDLTSNPSSSSSSPFVRFTSSYNQPRYPSSTSLSFSSSDSNAMSWSNGFLNYSTQPYNNNNSNNKSNNLSTLNFGRQQMENIYESYMHKNSNSTVPQGALPDTISAATKAITADPTFRSALAAALTSFIGAQGSIGSTQGNQSVGENSSQKMKWPEAFPVSNSTLSSSNSKVNGCASSFLNKTPANTQTTSLMLLPPSTLPFPTSKSTSASPAENSDTTS* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3022 598 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 39 594 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 145 164 - -
Apr9g3022 598 Gene3D WRKY domain 229 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g3022 598 MobiDBLite consensus disorder prediction 179 229 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 1 70 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 109 126 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 566 598 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 367 394 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 11 39 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 109 164 - -
Apr9g3022 598 Pfam WRKY DNA -binding domain 245 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g3022 598 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g3022 598 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g3022 598 Coils Coil 63 111 - -
Apr9g3022 598 MobiDBLite consensus disorder prediction 213 227 - -
Apr9g3022 598 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g3022 598 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 594 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3022 Apr-Chr9 37059523 37063938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3022 77 579 WRKY Transcription Factor Family AT5G15130 39.636 2.65e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g3022 WRKY 8.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3022 - - pvu:PHAVU_003G192000g 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0892 1 12011602 12017680 Apr9g3022 9 37059523 37063938 ECH
Apr7g1454 7 21671827 21673957 Apr9g3022 9 37059523 37063938 ECH
Apr3g0885 3 22968327 22971210 Apr9g3022 9 37059523 37063938 ECH
Apr9g3022 9 37059523 37063938 Apr9g3022 9 37059523 37063938 ECH
Apr7g1454 7 21671827 21673957 Apr9g3022 9 37059523 37063938 PCT