Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3019 ATGGGGAAATCACCAGGAAAATGGATCAAAACTGTACTTTTCGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGCTTGTTAACCAAAAAGAAGGAGTAATTACTTCCAATGTGTCTGAAACTGGTTTGGCTTTAGAACCAACCTCCAATACTATTGCCAGACACGAGGAAGACCTAGAGCTGGATAATAAAGAAGCAGAAAATGGTTTACCTGAAAATCAAGAAATAAACATAGTGGGATCTGTTCATCAAGATGCAGCACTTGATCCAGAGAAAATTCAGCTGGAGGAAGCAGCAACAAAGGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTAAGAGGCATAATAAGGTTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGGCAAGCTGTTGCTACATTATGCTCTATCTATTGTATTGTGAAGTTTCAAGCACTCGTTCGGGGAGGAAGAGTTAGACAATCTAATGTTGGATTTGAAATCCATGTGAAGTGCAATATATTGAAGCCTCTGGATGCCAAACTTCTCAAGCCAATTTCTATATCCACTAAAATAATGAAGCTGTCAGCAAATGCTTTCATTCGCAAGCTTCTTACTTCATCAACTACAATAATGGCATTGCGGTTGCAATATGTTCCTGGTGATCCAAATTCTGTCCTAAGTTGGTTGGAGCGCTGGTCAGTGTCTCGCTTTTGGAAACCAGTTCCTCAACCCAAGAAAATTCGGGATATGAAGTCTCAGAGAAAGCATGGTAATGTCTCAATTGGAGATACTCAAATGAGCAAGTCAAAACGTACCCACAGGAAGCCTGCTACTGCAAGTCTTGACTCAGTCCCAGCGCAAGCAAATCCTGAATTGGAGAAACCAAAACGAAGTGTAAGGAAAATTCCAAGCCAACCCTCTGATCCTGTGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAGCGTAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGAATGCTGTTCAGCCAGAAGTTGAAGCTGAGATGCCGAAGCAGAATATTGAAAAGGCAACAGTTACCTCAGGCCTTACTATTTCAGAACAAGAGGTCATTAGTTCTAATGAAAAGAGCAAGAAGGAAGCAACATTAACCATTTGCAGTGTGCCAGATATAGAAATTACTCCTAGACCTTCAGTTAGTAAGGAGGTGTCTGACACCCCAAGCAGTTATCAAGTGACTGTGGAATCGAAACCCTTGACAGAGATTACAAGTAAGGATAAAAACATTTCTGATGAGGTGAAAAATGAGTCCATAGATATACCAGAGCCTACTTGTAAAGATGAAAATTCCCACTTAACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCAAACCGAAAAACCTCAGTTGTAGCAAAGCAGGAACGTGCAGAGAATGGTTTACAGAATAGTCCAACATTACCGAGTTATATGGCAGCAACTGAATCTGCGAAGGCAAAGTTGAGGGCACAAGGATCCCCGAGATTTGGACAAGACGGAAGTGAACGAACCAACCATACACGACGGCATTCTCTGCCATCTTCAACTAACAGCAAAATTAGTTCGCATTCACCTAGGACACAGAGACCCGTTCAAGCAAGTGGCAAAGGGGGCCAGAAGAGTGACAGAGCTGTGTCATCTTCTAAAGATGGGAATGGAAAGGTCATTCAAGCAGAGTGGAGGAGGTAA 1749 0.4225 MGKSPGKWIKTVLFGKKSSKSNISKGRELVNQKEGVITSNVSETGLALEPTSNTIARHEEDLELDNKEAENGLPENQEINIVGSVHQDAALDPEKIQLEEAATKAQAAFRGYLARRAFRALRGIIRLQALIRGHLVRRQAVATLCSIYCIVKFQALVRGGRVRQSNVGFEIHVKCNILKPLDAKLLKPISISTKIMKLSANAFIRKLLTSSTTIMALRLQYVPGDPNSVLSWLERWSVSRFWKPVPQPKKIRDMKSQRKHGNVSIGDTQMSKSKRTHRKPATASLDSVPAQANPELEKPKRSVRKIPSQPSDPVQENPQSELEKVKRNLRKVHNPVVENAVQPEVEAEMPKQNIEKATVTSGLTISEQEVISSNEKSKKEATLTICSVPDIEITPRPSVSKEVSDTPSSYQVTVESKPLTEITSKDKNISDEVKNESIDIPEPTCKDENSHLTNGDLSHKEDPIGSENQKPNRKTSVVAKQERAENGLQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERTNHTRRHSLPSSTNSKISSHSPRTQRPVQASGKGGQKSDRAVSSSKDGNGKVIQAEWRR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3019 582 SMART iq_5 120 141 IPR000048 GO:0005515
Apr9g3019 582 SMART iq_5 97 119 IPR000048 GO:0005515
Apr9g3019 582 MobiDBLite consensus disorder prediction 530 573 - -
Apr9g3019 582 MobiDBLite consensus disorder prediction 482 498 - -
Apr9g3019 582 MobiDBLite consensus disorder prediction 249 321 - -
Apr9g3019 582 Pfam Protein of unknown function (DUF4005) 481 561 IPR025064 -
Apr9g3019 582 MobiDBLite consensus disorder prediction 396 582 - -
Apr9g3019 582 MobiDBLite consensus disorder prediction 452 468 - -
Apr9g3019 582 MobiDBLite consensus disorder prediction 420 446 - -
Apr9g3019 582 MobiDBLite consensus disorder prediction 399 419 - -
Apr9g3019 582 ProSiteProfiles IQ motif profile. 122 148 IPR000048 GO:0005515
Apr9g3019 582 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Apr9g3019 582 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Apr9g3019 582 Gene3D - 96 145 - -
Apr9g3019 582 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Apr9g3019 582 PANTHER IQ-DOMAIN 5-RELATED 1 570 - -
Apr9g3019 582 PANTHER PROTEIN IQ-DOMAIN 31 1 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3019 Apr-Chr9 37036015 37043413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3019 1 582 IQD Protein Family AT1G74690 43.443 1.22e-122 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3019 - - gmx:100794636 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0896 1 12110853 12118354 Apr9g3019 9 37036015 37043413 ECH
Apr7g1498 7 22156717 22162352 Apr9g3019 9 37036015 37043413 ECH
Apr3g0889 3 23031156 23040790 Apr9g3019 9 37036015 37043413 ECH
Apr9g3019 9 37036015 37043413 Apr9g3019 9 37036015 37043413 ECH
Apr7g1498 7 22156717 22162352 Apr9g3019 9 37036015 37043413 PCT