Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3016 ATGGGAAATTGCTTTGGAAGTCGTAACAAGGTTGATGACCCTATGAACTCACATTCCCAACCTTGTTCTGATGTTACTACAGTTCCCCATAGAGGCAATGATTTGTTAGCTCATTCAAGTCCAACAATGTATGGATACAGTGAAAAAGTAAAACCTGAGATTCTCCCCACTCCAAGATCCGAAGGGGACATACTTTCATCCCCACATTTAAAAGCCTTCACATTAAACGATCTCATGAATGCCACTAAAAATTTCCGTCCTGATAATCTAATTGGAGAAGGTGGATTTGGTTATGTCTATAAGGGGTGGATTGTTAATCATTCCTTTGGGCCTACAGTGCCTGGATCTGGAATGATTATAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGCCTAGAAGGAGATAACCGGCTTCTAGTGTATGAGTACATGCCCAACAGATGTTTGGAAAATCATCTATTTCGCAGGGGTGCACAACCACTTCCTTGGGCAACAAGAATCAAGGTTGCTATCGGTGCTGCTCGAGGTCTCTCCTTCCTACATGACTCTAAGCAACAAGTTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAGTTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCTGGGCCCACTGGTGATCATTCTCATGTTTCAACTCAAGTCCTGGGAACTCAGGGCTATGCTGCTCCTGAATATATTGCTACAGGTTGGCTTACTTCAAGGTGTGATGTCTATAGCTTTGGAGTTGTGCTATTGGAACTACTGTCAGGGCGCTATGCTGTTGATACTACGAAATCAGGAGTGGAACATAATCTTGTAGATTGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGAATTATGGACACAAGGTTAGAAGGGCAATACTCACAGAGAGCAGCTTATACAGTTGCAATTACTGCTTTACAATGTATTAGTGAGGCCAAAATTAGACCACTGATGTCTGAGGTTTTGGCCACCTTGGAACACTTGACAGTCAATAGACATTCAGCTAACCCATCTAGTGCAGAGAAGTCCATGACAAGTCCCATGAGAGAGATGGTCTGA 1176 0.4277 MGNCFGSRNKVDDPMNSHSQPCSDVTTVPHRGNDLLAHSSPTMYGYSEKVKPEILPTPRSEGDILSSPHLKAFTLNDLMNATKNFRPDNLIGEGGFGYVYKGWIVNHSFGPTVPGSGMIIAVKKLKPEGFQGHKEWLSELNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRCLENHLFRRGAQPLPWATRIKVAIGAARGLSFLHDSKQQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVLGTQGYAAPEYIATGWLTSRCDVYSFGVVLLELLSGRYAVDTTKSGVEHNLVDWARPYLGDRRKLFRIMDTRLEGQYSQRAAYTVAITALQCISEAKIRPLMSEVLATLEHLTVNRHSANPSSAEKSMTSPMREMV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3016 391 PANTHER OS01G0588500 PROTEIN-RELATED 16 376 - -
Apr9g3016 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Apr9g3016 391 MobiDBLite consensus disorder prediction 10 24 - -
Apr9g3016 391 Gene3D Transferase(Phosphotransferase) domain 1 171 386 - -
Apr9g3016 391 Pfam Protein tyrosine and serine/threonine kinase 89 295 IPR001245 GO:0004672|GO:0006468
Apr9g3016 391 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g3016 391 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
Apr9g3016 391 CDD STKc_IRAK 91 367 - -
Apr9g3016 391 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Apr9g3016 391 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Apr9g3016 391 MobiDBLite consensus disorder prediction 1 24 - -
Apr9g3016 391 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 16 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3016 Apr-Chr9 37014129 37017819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3016 71 367 Glycoside Hydrolase AT3G07070 52.824 7.50e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr9g3016 PK_Tyr_Ser-Thr 9.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3016 - - gmx:100791844 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0186 6 1826585 1828563 Apr9g3016 9 37014129 37017819 ECH
Apr9g3016 9 37014129 37017819 Apr9g3016 9 37014129 37017819 ECH
Apr7g1497 7 22123633 22128726 Apr9g3016 9 37014129 37017819 PCT