Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3010 ATGGAGGGAGGCGATGACTTCCACCACCATCACCACCGCCAGAACTTCCCATTCCAGCTCCTCGAGAAGAAAGAAGACCAAGAAGCAGCGTCATGCTCCACCTCCTCCCCATACCCTTCTCTAGCAATCTCCGCAGAACCAACCACATCCAATTCAACCCGATCCAACCAGCTCGTGCCGGTGCCGCCAGCCGAACCTGCCATCAAAAAGCCACCGCCCAAACGAACCTCCACCAAGGACCGCCACACCAAGGTCGACGGCCGTGGCCGCCGCATCCGAATGCCGGCGCTCTGCGCCGCCCGAGTCTTCCAACTCACCCGCGAACTCGGACACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAGGCAGAGCCCGCCGTCATCGCCGCCACGGGCACGGGAACCATCCCCGCGAACTTCACCTCCCTCAACATCTCCCTCCGAAGCTCTGGGTCCTCCATGTCCGTGCCATCTCAGCTACGATCCTCCTACTTCAACCCCAACTTCTCCGTTCAACAACGCAGAACCTTGTTCCCGGGAATCGGCTTGTCCTCGGAGAGCAACACCAACACCTCCACCACTCTCCTCAATTTCCAATCCAACAACCTCACCGCCACCATGTTGCAGGCCAAGCAAGAACTCCGCGACGGTGCTCCCTCTTCCTCCACGTTGGATTTGTCGGAGACAAGCGCCGAAGAAGGTTTGGGAAGAAAAAGAAGACCCGTGGAACAAGACTTGTCCTCCACGCAGCATCAAATGGGTAGTTATCTGCTGCAGTCGAGTGCAGGGGCTATTCCGACGTGTCACGCTCAGATTCCGGCGAATATATGGATGGTAGCAAATTCCTCTAATAACCAAGTTATGAGCGGTGATCCTATATGGACCTTCCCACAGGTTAATAATAGTGCTTTGTATAGAGGCACAGTTTCTAGTGGGTTGCATTTTATGAACTTTCCCACCCCCATGGCGTTGTTGCCTAGTCAGCAACTTGGGTCTTCTGGGATTGGTGGTGTTGGGGGAAGTAGTGGAGTTGGAAATATCAATATGAATGAAGGGCATTTGAGTATGCTTGCTGGGCTTAGCCCTTATCGTCCTGTTATAGGAGTTTCCGAGTCTCAGGCAAGTGGGTCACAATCACATCGTGGTGGTGGAAGTGATGATCGACATGATAGTACCAGTCACCACTCTTAG 1197 0.5455 MEGGDDFHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPTTSNSTRSNQLVPVPPAEPAIKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSVQQRRTLFPGIGLSSESNTNTSTTLLNFQSNNLTATMLQAKQELRDGAPSSSTLDLSETSAEEGLGRKRRPVEQDLSSTQHQMGSYLLQSSAGAIPTCHAQIPANIWMVANSSNNQVMSGDPIWTFPQVNNSALYRGTVSSGLHFMNFPTPMALLPSQQLGSSGIGGVGGSSGVGNINMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGGSDDRHDSTSHHS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3010 398 MobiDBLite consensus disorder prediction 373 398 - -
Apr9g3010 398 Pfam TCP family transcription factor 76 250 IPR017887 -
Apr9g3010 398 MobiDBLite consensus disorder prediction 1 87 - -
Apr9g3010 398 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Apr9g3010 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 397 IPR005333 GO:0003700
Apr9g3010 398 MobiDBLite consensus disorder prediction 215 231 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 72 87 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 215 253 - -
Apr9g3010 398 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 9 397 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 30 59 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 384 398 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 233 247 - -
Apr9g3010 398 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3010 Apr-Chr9 36954815 36957049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3010 67 392 TCP Transcription Factor Family AT3G47620 44.903 2.96e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr9g3010 TCP 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3010 - - pvu:PHAVU_003G190900g 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0911 1 12452484 12455024 Apr9g3010 9 36954815 36957049 ECH
Apr9g3010 9 36954815 36957049 Apr9g3010 9 36954815 36957049 ECH
Apr7g1485 7 21934902 21937528 Apr9g3010 9 36954815 36957049 PCT