Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3004 ATGGGGAGGCCACCTTGCTGTGACAAAATTGGTATTAAGAAGGGTCCTTGGACTCCCGAGGAAGACATCATCTTGGTGTCTTATATTCAAGAACACGGACCAGGCAATTGGAGATCAGTTCCAACCAATACAGGTTTGATGAGATGCAGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCGGGGATCAAACGAGGTAATTTCACCGATCATGAGGAGAAGATGATAATCCACCTCCAAGCTCTTTTGGGGAACAGATGGGCTGCTATAGCCTCCTATCTTCCACAGAGGACAGACAATGACATAAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTGAACAAAAATGATCAAAGTGGGACTGAAGAAGGTGTTGACCAAGAAGGGCATTCACATTCTTGTTCACAGGGAAAGGGTCAATGGGAAAGAAGACTACAAACAGATATCCAAATGGCAAAACAAGCTTTGTCTGAGGCTTTGTCCCTTCACAAGCCACCAAATCATCATGTTTTGCCTGATACTACCAACCCCTTAAGTTCTCATCATGACACAAGACCACACCATGCATCCCCATATGCATCAAGCTACGAAAACATTTCTCGATTGATGGAAAACTGGATGAAATCCCCAAACTCAACTGATCAAACAAATTCTTCAGGATATTCCCTCAGCAATAACATGGTCACTACAGGATCTAGTTCTAGTGAAGGAGCACAAAGCAGCACCACATGTACCCAAGATCTTGCTTTTGACTCCTTGTTGACCCTCAACTCCTCCAAACTTGATGCCTCTCGATCTGAGCCCCAGGTTCCTCTTACGCTGTTGGAGAATTGGCTTTTTGATGATGGAACTGCTCAATGTCATGAAGATCTAATGAACATGTCATTGGAGGAAGGTAGCGCAGGTTTGTTTTAG 924 0.4383 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKNDQSGTEEGVDQEGHSHSCSQGKGQWERRLQTDIQMAKQALSEALSLHKPPNHHVLPDTTNPLSSHHDTRPHHASPYASSYENISRLMENWMKSPNSTDQTNSSGYSLSNNMVTTGSSSSEGAQSSTTCTQDLAFDSLLTLNSSKLDASRSEPQVPLTLLENWLFDDGTAQCHEDLMNMSLEEGSAGLF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3004 307 MobiDBLite consensus disorder prediction 118 145 - -
Apr9g3004 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr9g3004 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 292 - -
Apr9g3004 307 MobiDBLite consensus disorder prediction 211 243 - -
Apr9g3004 307 CDD SANT 69 112 IPR001005 -
Apr9g3004 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr9g3004 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr9g3004 307 CDD SANT 16 61 IPR001005 -
Apr9g3004 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr9g3004 307 Gene3D - 13 66 - -
Apr9g3004 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr9g3004 307 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 292 - -
Apr9g3004 307 MobiDBLite consensus disorder prediction 118 132 - -
Apr9g3004 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr9g3004 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr9g3004 307 MobiDBLite consensus disorder prediction 166 195 - -
Apr9g3004 307 Gene3D - 69 141 - -
Apr9g3004 307 SMART sant 13 63 IPR001005 -
Apr9g3004 307 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3004 Apr-Chr9 36895504 36897331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3004 1 307 MYB Transcription Factor Family AT5G62470 51.381 1.29e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g3004 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3004 K09422 - gmx:100799402 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3004 9 36895504 36897331 Apr9g3004 9 36895504 36897331 ECH