Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2994 ATGGGAAGAGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAACCGACATGTGACTTATTCCAAGCGAAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGTGATATAGATATTGTCCTTCTAATGTTTTCTCCCACGGGAAAGGCTACATTATTACAAGGAGAACGCAGCAATATTGAGGAGATCATTGCAAAATTTTCTCAACATAGCCCACAAGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAATTACAAGATTTCTTAGGTTCAAGTCAAACAGTGGAGGAATTAACTTATCAACTGAGAATTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATTTGGAGAAGATCAACAGCATAGAACATCTTAAGCAAATGGAAGACTCACTTAGGGAATCAATCAATCGAGTGTGCCTACAGAAGGAAAATTTAGGAAAGCACCAACTAATTTCACTGGAATGTGCTAACCAGTTGCAGGAAGGGATGACCTTGCCCTTGATGATGGCTGGCCTACAAGAATCACAACCCCTATCTTGGCTCTTGAATAGTGATAATCGTCAGTTGATGTTACCTAGTGAACCAAAATATCTACCATTTAGTGATAATACCAATAGAGATGTTGAGTGCTCCACTGACATTTCACTCCCAGGCTATTCTGGTTATATTGGGAGTAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTCACTTCTTTGGGTCAAGGAGGTGCTGCCTTGAATGAGTTAAATGGAACTGCTTACTTAAATGTACAACATTGTGATCAGTTTGCATATCCTCCTCCACCAGATATCGAGGAAGTGAAACATCAACCAACAACAATGAACAGTAAACCAAACACTGTGGAATACCAAGTTAATAGCAACTTCGATCTGCCTAGATCACTGTTTGAAAATGGACATCAGTTCTGGAATTCTGCTTCTGGGTCGTGTGGGATTGCCATGTATAATGAGAATGGCTACCATAGGTAA 1065 0.3878 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKATLLQGERSNIEEIIAKFSQHSPQERAKRKMESLEALKKTFKKLDHDVKLQDFLGSSQTVEELTYQLRILQAQLTEVHQRLSYWNNLEKINSIEHLKQMEDSLRESINRVCLQKENLGKHQLISLECANQLQEGMTLPLMMAGLQESQPLSWLLNSDNRQLMLPSEPKYLPFSDNTNRDVECSTDISLPGYSGYIGSNKLEVGSSPQVTSLGQGGAALNELNGTAYLNVQHCDQFAYPPPPDIEEVKHQPTTMNSKPNTVEYQVNSNFDLPRSLFENGHQFWNSASGSCGIAMYNENGYHR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2994 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 Coils Coil 77 97 - -
Apr9g2994 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Apr9g2994 354 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 353 - -
Apr9g2994 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 353 - -
Apr9g2994 354 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr9g2994 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Apr9g2994 354 Coils Coil 113 133 - -
Apr9g2994 354 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2994 Apr-Chr9 36811156 36815850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2994 1 275 Type I MADS-box Gene Family AT2G03060 52.281 4.13e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr9g2994 SRF-TF 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2994 - - pvu:PHAVU_003G189100g 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2994 9 36811156 36815850 Apr9g2994 9 36811156 36815850 ECH