Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2992 ATGGAAAACGTTTCAGTGCTAAGTAAGGAAGAGGATCAGATGGATTTGCCACCTGGATTTCGGTTTCACCCCACTGATGAAGAGCTTATAAGCCATTACCTCTACAAGAAGGTCATTGACACAAACTTCTCTGCAAGGGCCATTGGAGAAGTCGACCTAAACAAGTCTGAACCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAATGGTACTTTTTCTGCGTGAGAGACAGAAAATACCCCACTGGGTTGAGGACCAACAGGGCCACGGAAAAAGGATATTGGAAGGCCACAGGGAAAGACAAGGAAATCTTCAGAGGAAAATCGCTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAGGGTCGAGCCCCCAAAGGAGAAAAAAGCAACTGGGTCATGCATGAATACAGACTCGAGGGTAAATTCTCGGTTCACAATCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGTAGGGTGTTTCAAAAGAGTTCAGCTGGGAAGAAAACCCATATTTCGGGGATAATGAGGTTGGATTCTTTTGGGAATGAATTGGGTTCTTCTGGCTTACCACCCCTCACAGAGTCCTCACCTTCCATTGGCAACAAGCCCAAACCACTCACTGATTCGGCTTACGTGCCCTGCTTCTCCAGTCCAATTGATCTTCAAAGAAACCATGAAGGCATCTTTGATTCCTTCACCAACCCCATTTACGGGGTATCATCAAATTCACTAGATATTCTTCCAAGAATGCAACCTTCTGCCTCATTCTACTCCATTCAAGGTGTTCAAGTTGCGGCTAATTTTCAATTTCCAGGTTCTGTCTGTGGTGATCAGAGCATCTTAAAAGCCTTATGTGAAAACAACGGCTCAAACTTCACCAATGGTTTCAAGTCAGAGAGGGACATGATCAGTGTCTCGCAGGAAACGGGTCTTACTACTGATATAAACGCTGAAACCTCTTCTGTGGTATCGAATTTTGATATGTGTAGGAGACCCTTCGACAATCAGAATCATGCACCTGCTTCTGTTGCACTTGCAGCAGTGGATCTCGATAGTTTCTGGAATTACTGA 1083 0.4441 MENVSVLSKEEDQMDLPPGFRFHPTDEELISHYLYKKVIDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEKGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFGNELGSSGLPPLTESSPSIGNKPKPLTDSAYVPCFSSPIDLQRNHEGIFDSFTNPIYGVSSNSLDILPRMQPSASFYSIQGVQVAANFQFPGSVCGDQSILKALCENNGSNFTNGFKSERDMISVSQETGLTTDINAETSSVVSNFDMCRRPFDNQNHAPASVALAAVDLDSFWNY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2992 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 357 - -
Apr9g2992 360 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Apr9g2992 360 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Apr9g2992 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 357 - -
Apr9g2992 360 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Apr9g2992 360 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2992 Apr-Chr9 36784373 36786207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2992 14 360 NAC Transcription Factor Family AT5G07680 58.166 5.37e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr9g2992 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2992 - - gmx:100798002 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0936 1 13271046 13272633 Apr9g2992 9 36784373 36786207 ECH
Apr9g2992 9 36784373 36786207 Apr9g2992 9 36784373 36786207 ECH