Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2979 ATGGGGTGTGTGGTGGTGAAGCAGGCGGTGTCGGTGACGCCTGCTATTGACCACTCGGTTGAGTTGGAGAACAACAGGAAGAAGAAGACTGAGTCAGTGGGAGCGAGTAGGAGCGAGTTGGGTGAGTCAGGGAGGGCGAGTTCGAATGGTGGAAGTGAGTCTCTGAGCTTCAGATTGGGGAACCTCAGCAAGTATGTGGAGGGAGAACAAGCGGCGGCGGGTTGGCCGGCGTGGCTCAGCGCCGTCGCCTGTGAAGCCATTCACGGTTGGGTGCCTCTTCGAGCTGATGCATTTGAGAAACTTGATAAGATTGGGCAGGGTACATATAGTAGTGTTTTTCGAGCAAAGGAGATTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAGAGTGTAAGGTTTATGGCACGAGAAATAATGATTCTTAGAAGGCTTGATCATCCGAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTTTTTGAGTACATGGAGCACGACATCACAGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAACCACAGATCAAATGTTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGCGGGGTGTAATGCACAGAGATATCAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGGTTGGCAAACTTTTGCAATTCTGGGAACAAGCAACCTCTCACTAGCCGTGTTGTCACCTTATGGTATCGTCCTCCAGAACTTTTGCTTGGTTCAACAGATTATGGTGCATCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGTTGCTAGTTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGATGAATACTGGAAAAAGACCAGACTTCCTCATGCAACTTTGTTCAAGCCCCAGCAACCATATGACAGTTGCCTCCGAGAGACATTTAAAGATTTTCCTGCAAGCAGTGTAAATCTTATACAAACTCTTCTTTCTGTTGAACCAAACAAACGTGGGACTGCCTCATCTGCTCTCTCGTTGGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCAGTATACCCTCCTAGCAAGGAGATTGATGCAAAACACGAGGAGGAGTCAAGAAGGAAAAAGATTGGTGGACGAGTTTGTGGACCAGAAACAAGAAAACCATCAAGAAAGCCACTAGGACTGAGTAAATTAGCTCCAGCAGAGGATTTTACCAGTCAAACTCAAACTTCACACAAGATGGATGATAGATACGTCCACATCCTTAAAGAAGAGAACACTAACACAGGTGAGGAGGCACCAAAGCAATCTAGTGGTAAACCAGAAGATTCTTCCCAGATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGTCCATTACAAGTTTCAAAATCAAGTGGTTTTGCATGGGCAAAAAGGCGTAGAGATGACACTTCAATTAGATCCCACACTCGGTCGATTTCTAGAGGATATATCTTTAATTCATTAGAAACTTCAACAATAAATTTAAGGAATAATTCTGAATCCATAAACTATGAAAATAAGGACTTTCTTGGGGCACACACCAACTTTAGGGGCCATCATGACCTACCTGAAATTTCTAAGCTTGCAATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAAGAATACCATTCACAAGAACTATCTGTGGCTCTTTATCACAGGGAAGACTCACTATCCAAGAGAAGTAACCTGAGTTATCAAGATCAAGGAGAAAAGGTTGAGTTTTCAGGGCCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAAACACGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAGGCAAGGGAAGTAA 2013 0.4382 MGCVVVKQAVSVTPAIDHSVELENNRKKKTESVGASRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGNKQPLTSRVVTLWYRPPELLLGSTDYGASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFPASSVNLIQTLLSVEPNKRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDAKHEEESRRKKIGGRVCGPETRKPSRKPLGLSKLAPAEDFTSQTQTSHKMDDRYVHILKEENTNTGEEAPKQSSGKPEDSSQMKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRSHTRSISRGYIFNSLETSTINLRNNSESINYENKDFLGAHTNFRGHHDLPEISKLAMQNQWSKFDRPDSFDTSEEYHSQELSVALYHREDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRGKRQGK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2979 670 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Apr9g2979 670 MobiDBLite consensus disorder prediction 449 470 - -
Apr9g2979 670 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2979 670 MobiDBLite consensus disorder prediction 398 499 - -
Apr9g2979 670 CDD STKc_CDK9_like 98 382 - -
Apr9g2979 670 PANTHER CELL DIVISION PROTEIN KINASE 30 663 - -
Apr9g2979 670 MobiDBLite consensus disorder prediction 471 492 - -
Apr9g2979 670 Gene3D Transferase(Phosphotransferase) domain 1 181 421 - -
Apr9g2979 670 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2979 670 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2979 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 30 663 - -
Apr9g2979 670 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Apr9g2979 670 MobiDBLite consensus disorder prediction 23 53 - -
Apr9g2979 670 MobiDBLite consensus disorder prediction 401 426 - -
Apr9g2979 670 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Apr9g2979 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2979 Apr-Chr9 36683205 36689480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2979 90 414 Core Cell Cycle Gene Families AT5G10270 51.026 9.00e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr9g2979 Pkinase 5.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2979 - - gmx:100784406 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0951 1 13808704 13815896 Apr9g2979 9 36683205 36689480 ECH
Apr9g2979 9 36683205 36689480 Apr9g2979 9 36683205 36689480 ECH