Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2977 ATGTCGGACGAAGAGCACCATTTCGAATCCAAGGCCGACGCAGGAGCCTCCAAAACCTACCCTCAGCAAGCTGGTACCATTCGCAAGAACGGCTACATCGTTATCAAGGGCCGTCCCTGCAAGGTTGTTGAAGTTTCTACTTCTAAGACTGGGAAGCACGGACACGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACCGCTAAGAAGCTTGAGGATATCGTGCCATCTTCTCACAACTGTGATGTTCCTCATGTGAATCGTACTGATTACCAGCTCATTGATATTTCTGAGGATGGATTTGTGAGTCTACTTACTGAGAATGGGAACACTAAGGATGACCTCAGGCTTCCAACTGATGATAGTCTGCTCACCCAGGTTTGTACAAATCTGATTTTTTGTATCCTTATAAAGGATGGATTTGCCGAGGGTAAGGATCTTGTTGTTTCTGTCATGTCTGCTATGGGTGAGGAACAGATTTGTGCCCTGAAGGATATTGGGCCGAAGAACTAG 513 0.46 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDSLLTQVCTNLIFCILIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2977 170 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 166 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Apr9g2977 170 SUPERFAMILY Nucleic acid-binding proteins 86 166 IPR012340 -
Apr9g2977 170 Gene3D - 86 169 IPR012340 -
Apr9g2977 170 CDD S1_eIF5A 86 166 - -
Apr9g2977 170 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr9g2977 170 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 164 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr9g2977 170 PANTHER BNAA07G09420D PROTEIN 1 166 - -
Apr9g2977 170 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g2977 170 TIGRFAM eIF_5A: translation elongation factor IF5A 17 162 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Apr9g2977 170 SMART eIF_5a_2 85 164 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr9g2977 170 Gene3D - 1 85 IPR014722 -
Apr9g2977 170 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Apr9g2977 170 PIRSF Transl_init_eIF5A 1 167 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2977 Apr-Chr9 36661807 36663285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2977 1 169 Eukaryotic Initiation Factors Gene Family AT1G13950 84.615 2.61e-101 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2977 K03263 K02180 gmx:100820467 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2977 9 36661807 36663285 Apr9g2977 9 36661807 36663285 ECH