Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2968 ATGAGGTCTCATGTCACCAACCTTTCAGCTGAGACAGAAGAGAAGGAAAAGCTTGCAACGAGGAAGCCTTCATCATCTCTCAACAATGGTGTAGACAAAGATTCTGAAGCTGCAACCAACGCTGGTTATGGTCTTAGGGAGAACCCCAAGAAGACTTGGAGGATTGAGAATTATTCAAGTGAAGACACTTTGGTGGTCTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTTCAATCTTGGAAAGCCTTGTTTGGTCACATGAAATGCCACTCTGAGAAAGAAAGAGTTTCCAATAGCTTGGAGGATCAAGATTCATGGACTGATAATAACAATGCTAATTCTAGCCACAAGATGGTTATGGATAGCCAATCTGATAATGAAGCGACTGCTCCAAATAGAAGAAGAAGATCCAAGAGAAGAACAAGGTACATGGTTGCTGCTGCTGCTGCTGCTACAACTTCTTCTGTTGTGTCTTTTACCAACCCTTCCTCTTCTCTTTCCGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCTTCATTCTGTTGCTGAGTCCTCTGACAATAACTCTGCTTGCTTTGAAGCTCGATCTTCAGTTAGAACTAATCTGGTTACTAAATTTGAAGGCAGCAACAAGTTCAATCCTACCTCCAAGTCCAACATAGCAAAACCGATCAAGCAAAGTGATAAAAAGGGGGAGGTTGGAGATTCGGCTTCTCAAAAACCCAACTCTATCAAAGGGAAAAGTTCAGAACTTTTGGCTACTACTGAGTTTCCTGAAAATGGGTTTAGGATGAGCAAGGTTGGAGTTTCCAATAAAGGGTTCATCAAGGATGAAAAAGTTAACAAGTCTGAGCTTGACTATGTGTCTACATTGGAGGATTCTGAAGGTGAACATGGGAGGAACAGAGTCAATGGAACAGAATCAGTTTTGTCAAAGTCTGCTACTCCTGTTTCTAACAAGCACAGTTCAATCAAGACAAAGTTTTTTGGTTCTGAACTGAAGTCAAATTATTCCCTTAAGAATTGGGTGGACAAGGCTTCAGAAGCTGAATCCAGCAAGAACTCCCATAAGAGAGGCAAGTTCGAGTGTACCACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGACATAGAGCTAGCCATAAGAAGATTAAAGGTTGCTTTGCTTCAAAAAATGAGAGCAGTGAAAACAGCATTGAAACTGAACTCTCCCCTGACCCCACAACTGAAAGCAAGCTCATGAAGAACAGTGGCAATGAATATCTGGTTGAACATGGACATGGTCCTGGTTTTCATAATGAGGTAGATACAGTTACTGAGTCCAAGAAAAGCAAAGGGCACGAGTGCCCAATTTGCTTTAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTACTTGAGGAACCAGTACCAGAAATTAGAGACTTGCTTGATCTTAATCTTCCTGCAGCTACTGAGGAAGAAAGCAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAG 1659 0.4286 MRSHVTNLSAETEEKEKLATRKPSSSLNNGVDKDSEAATNAGYGLRENPKKTWRIENYSSEDTLVVFDKFCKECGKGFQSWKALFGHMKCHSEKERVSNSLEDQDSWTDNNNANSSHKMVMDSQSDNEATAPNRRRRSKRRTRYMVAAAAAATTSSVVSFTNPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGLHSVAESSDNNSACFEARSSVRTNLVTKFEGSNKFNPTSKSNIAKPIKQSDKKGEVGDSASQKPNSIKGKSSELLATTEFPENGFRMSKVGVSNKGFIKDEKVNKSELDYVSTLEDSEGEHGRNRVNGTESVLSKSATPVSNKHSSIKTKFFGSELKSNYSLKNWVDKASEAESSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASKNESSENSIETELSPDPTTESKLMKNSGNEYLVEHGHGPGFHNEVDTVTESKKSKGHECPICFKVFPSGQALGGHKRSHMVGGSESRNFQTVVLEEPVPEIRDLLDLNLPAATEEESNSHADSNRPWWVVEDNHKQEALVGLIS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2968 552 MobiDBLite consensus disorder prediction 103 128 - -
Apr9g2968 552 SUPERFAMILY beta-beta-alpha zinc fingers 70 399 IPR036236 -
Apr9g2968 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Apr9g2968 552 ProSitePatterns Zinc finger C2H2 type domain signature. 379 399 IPR013087 -
Apr9g2968 552 MobiDBLite consensus disorder prediction 252 267 - -
Apr9g2968 552 SMART c2h2final6 377 399 IPR013087 -
Apr9g2968 552 SMART c2h2final6 69 91 IPR013087 -
Apr9g2968 552 SMART c2h2final6 465 487 IPR013087 -
Apr9g2968 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 377 404 IPR013087 -
Apr9g2968 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 465 487 IPR013087 -
Apr9g2968 552 Pfam C2H2-type zinc finger 71 93 - -
Apr9g2968 552 Pfam C2H2-type zinc finger 465 488 - -
Apr9g2968 552 Pfam C2H2-type zinc finger 377 401 - -
Apr9g2968 552 MobiDBLite consensus disorder prediction 224 238 - -
Apr9g2968 552 MobiDBLite consensus disorder prediction 7 21 - -
Apr9g2968 552 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 552 - -
Apr9g2968 552 MobiDBLite consensus disorder prediction 97 142 - -
Apr9g2968 552 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Apr9g2968 552 Gene3D Classic Zinc Finger 374 487 - -
Apr9g2968 552 ProSitePatterns Zinc finger C2H2 type domain signature. 467 487 IPR013087 -
Apr9g2968 552 MobiDBLite consensus disorder prediction 1 44 - -
Apr9g2968 552 MobiDBLite consensus disorder prediction 224 267 - -
Apr9g2968 552 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2968 Apr-Chr9 36559856 36561514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2968 400 523 C2H2 Transcription Factor Family AT1G26610 45.238 1.60e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g2968 zf-C2H2_6 6.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2968 - - gmx:102669916 792.341