Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2955 ATGGCAACAGCGAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGAGAATGCACTGCCGACGAGATCCGATCGGCTTACCGGCGGCTCGCCCTTCAGCGCCACCCCGACAAACTCGTCCAATCCGGTCTCTCCCAAGCCGACGCCACGGCTCAGTTCCAAGAACTCCAACACGCCTACGAAGTCCTCTCCGATCCCAAGGAACGTGCGTGGTACGATTCTCACCGTTCCCAGATCCTGTACTGCGAGCCTAACTCACGTAACAACTCCATTGTCACCGACCTTTTCTCCTTTTTCTCGAACACCGTCTATTCTGGTTACTCCGATTCCGGGAAGGGTTTCTACAAGGTATATTCCGACGTATTCGATAGAATCCACGCGAACGAAATAAACTTCGCGAAGAAAATGGGCATTGGTGTGGAGGCGGTTCGGCCCGCGCCTGTTATGGGGAATTTGGATAGTCCGTATGAGCAGGTTACGGCGTTTTATGGTTACTGGTTAGGGTTTTGTACGGTTATGGATTTTTGTTGGGTTGATGAGTTTAATGTTATGGCGGGTCCAAATCGGAAATCGCGGAGGCTTATGGAGGAGGAGAATAACAAGGTTAGGAGGAGGGCGAGGAAGGAGTATAATGATACTGTGCGGAAATTGGGTGATTTTGTGAAGAAGAGGGATAAGAGGGTGGTTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAGGGCGGAGGAGAGGGAGAGGAAGAAGAGGTTGGAGAAAGAGAGGAAGGAGAGGGTTATGGCTTATGAGGAGCCTGAGTGGGCTAAGGTTGAGGAGGAGGAAGAGGTGGTGGTGGAGGAGTGGTTTGAGGAGATGGAAGAGAAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAACAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGCTTGATGATGAAGAGGATTTGGAATTGGATGTGGAAGAAGAAGGAGAAAGAGAAGGAATGGAACATGAGGAAGATGCAATTGCGGAGAATGATGATCAAGGCGAGACTGATTCTGTAGTTAATGATTTGGAGAGTAGGATTAGAGATGGTCTCAATGTTGCAGATGAGGAGACTAGAAATGAGGCTGAACTAATTGATGATGATGATGATGAATTTTCTGATGCCTTGCATGCAGAGAAGGGGGAAGAGGAGTTGTCAGTTAGATTTGATGACAATGATGATGATGAAAATGATGTTCTTGAAGCAATGATGGCAGGGCAGAAGAACAGAAAACCGGGTGCTTCAACACACAAACCCAAGGCTTCGGTAGCTCCATCTCAAATTGAAAGTGAGAGTGATGGGATTGGCTTTCCGGAATATAACAATCGGAAGAGCACAAGGAAGAAACGCGGAGCCAAGAAAGAAAAGGGTAGGAAACACTGGGAAGAATCTAATGTCGCTGCTGCCAATGGCAATTACGAGAATGTAAACAGCAATGGAAATGATAATTCTAATGCAGAAGAGTCTGTTTCCCAACATTCGGTGGAAAATGAGATTAATGGTAAAGAGGGCGAACAGGTTGGTAGGAATAAGAAGATTTCTAATCAAGCAGCTGCTGATAAAAAGGGAACTGCAAAGGACCCAAAAAGCAAAGCAAAAAATTCATCCAAAGGAAGAAAAGGGAAGATGATATCAAAGAGTCTTGGCAATGCTTGTGAGACATGTGGAGAGGAGTTTGAATCAAGGAATAAATTACATCAGCATCTTGGCGATTCTGGGCACGCAACATTAAAATGTCGATAG 1824 0.4622 MATAKRCHYEVLGLPRECTADEIRSAYRRLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILYCEPNSRNNSIVTDLFSFFSNTVYSGYSDSGKGFYKVYSDVFDRIHANEINFAKKMGIGVEAVRPAPVMGNLDSPYEQVTAFYGYWLGFCTVMDFCWVDEFNVMAGPNRKSRRLMEEENNKVRRRARKEYNDTVRKLGDFVKKRDKRVVDMKVKKNLEMEKKRAEERERKKRLEKERKERVMAYEEPEWAKVEEEEEVVVEEWFEEMEEKKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEDLELDVEEEGEREGMEHEEDAIAENDDQGETDSVVNDLESRIRDGLNVADEETRNEAELIDDDDDEFSDALHAEKGEEELSVRFDDNDDDENDVLEAMMAGQKNRKPGASTHKPKASVAPSQIESESDGIGFPEYNNRKSTRKKRGAKKEKGRKHWEESNVAAANGNYENVNSNGNDNSNAEESVSQHSVENEINGKEGEQVGRNKKISNQAAADKKGTAKDPKSKAKNSSKGRKGKMISKSLGNACETCGEEFESRNKLHQHLGDSGHATLKCR* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2955 607 ProSitePatterns Zinc finger C2H2 type domain signature. 579 601 IPR013087 -
Apr9g2955 607 Pfam DnaJ domain 8 73 IPR001623 -
Apr9g2955 607 MobiDBLite consensus disorder prediction 495 524 - -
Apr9g2955 607 Gene3D DnaJ domain 1 97 IPR036869 -
Apr9g2955 607 SUPERFAMILY Chaperone J-domain 4 103 IPR036869 -
Apr9g2955 607 SMART c2h2final6 293 317 IPR013087 -
Apr9g2955 607 SMART c2h2final6 577 601 IPR013087 -
Apr9g2955 607 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Apr9g2955 607 MobiDBLite consensus disorder prediction 328 365 - -
Apr9g2955 607 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 607 IPR044648 -
Apr9g2955 607 ProSiteProfiles Zinc finger C2H2 type domain profile. 577 606 IPR013087 -
Apr9g2955 607 CDD DnaJ 7 65 IPR001623 -
Apr9g2955 607 SMART dnaj_3 6 68 IPR001623 -
Apr9g2955 607 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Apr9g2955 607 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Apr9g2955 607 PRINTS DnaJ domain signature 9 27 IPR001623 -
Apr9g2955 607 PRINTS DnaJ domain signature 27 42 IPR001623 -
Apr9g2955 607 PRINTS DnaJ domain signature 48 68 IPR001623 -
Apr9g2955 607 SUPERFAMILY beta-beta-alpha zinc fingers 285 335 IPR036236 -
Apr9g2955 607 Coils Coil 234 261 - -
Apr9g2955 607 Gene3D Classic Zinc Finger 281 341 - -
Apr9g2955 607 MobiDBLite consensus disorder prediction 308 327 - -
Apr9g2955 607 MobiDBLite consensus disorder prediction 430 573 - -
Apr9g2955 607 Pfam Zinc-finger double-stranded RNA-binding 293 318 IPR022755 -
Apr9g2955 607 MobiDBLite consensus disorder prediction 308 400 - -
Apr9g2955 607 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 322 IPR013087 -
Apr9g2955 607 ProSitePatterns Zinc finger C2H2 type domain signature. 295 317 IPR013087 -
Apr9g2955 607 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2955 Apr-Chr9 36423009 36425833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2955 5 607 C2H2 Transcription Factor Family AT1G74250 49.459 5.23e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g2955 DnaJ 9.7e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2955 K09506 - gmx:100788305 796.578