Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2951 ATGGCTTTCTTTGGTAGAATTGGGAATCTATTAAGACATGCAGCGAACAGGCAGATTAATTCACAGATTAGTTCAGAATTGCGTGCAACGCCTTCTGTTTTTCTGGCCATACGCAGCATGTCTTCTGCTCCAAGCTCAAAGCTGTTTATAGGAGGTGTTTCATTTTCTACTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCTAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACAGTTCAGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTAGACGGTCAGGACCTTCATGGGCGCCGAGTTAGGGTAAATTACGCAAATGAGAGAACTCGTGGATTTGGTGGTGGAGGCGGTTTTGGTGGTTCTTATGGTAACTCACCATATGGTGCTGGAGCTGGCACTGGCTATGCTGGTTCTTATGGTGGCTCTCCGTATGGTGGTGGTGGCTATGGTGGAAATGCTGCTGGGAGTTATGGTGGTGGTGGCTATGGCGGAAATGTTGCTGGAGGTTATGGTGGTGGTGGATATGCTTCAGGTGGCAGTTATGGGGACAGCGGGAGTGGAATGAATTATGGGAATGATGGTAACCTTACAAGTGGAAACACTTACACTGGTGGAAGTAGTGGAGGATATGGTGGTAACAGTGGAAATTTTGGGGATGCTGGAGGTGTAGGCAATCTTGAAAGCTCTGGTGGTTTTGCTGACAGTGATAATTATGCTGCGTCTGGTGGTGGTAGCCATGGTTTTACAAGTAGTGGATATGATGGAAGTGCCGTGGATGGCAGTACTGGCACAAGCTTTACTGGTGGATATGATGGAAGTGGAGGGTTGGATAGCAAAGAAAGTAGCAATAGAGATGGGGATTTGGGGGACTCATTGGAAGGAAATTACAAGGATGACGATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 984 0.4593 MAFFGRIGNLLRHAANRQINSQISSELRATPSVFLAIRSMSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVRVNYANERTRGFGGGGGFGGSYGNSPYGAGAGTGYAGSYGGSPYGGGGYGGNAAGSYGGGGYGGNVAGGYGGGGYASGGSYGDSGSGMNYGNDGNLTSGNTYTGGSSGGYGGNSGNFGDAGGVGNLESSGGFADSDNYAASGGGSHGFTSSGYDGSAVDGSTGTSFTGGYDGSGGLDSKESSNRDGDLGDSLEGNYKDDDDDTDNFAKRA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2951 327 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 170 - -
Apr9g2951 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Apr9g2951 327 SUPERFAMILY RNA-binding domain, RBD 38 137 IPR035979 GO:0003676
Apr9g2951 327 MobiDBLite consensus disorder prediction 267 327 - -
Apr9g2951 327 MobiDBLite consensus disorder prediction 295 310 - -
Apr9g2951 327 Gene3D - 13 141 IPR012677 -
Apr9g2951 327 MobiDBLite consensus disorder prediction 267 294 - -
Apr9g2951 327 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 170 - -
Apr9g2951 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Apr9g2951 327 SMART rrm1_1 47 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2951 Apr-Chr9 36394798 36398488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2951 43 185 Eukaryotic Initiation Factors Gene Family AT2G36660 27.778 1.09e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2951 K12741 - gmx:100782808 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2951 9 36394798 36398488 Apr9g2951 9 36394798 36398488 ECH