Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2949 ATGGCGGCGAAATCAGTAACCCCAGAAGCCATCTCAACGCTTCTCGCTAACCCTTCCCCTGATTCTTCATCGGATCTTCCCTACATCGTCGTCCAAGTTCTCGATCTCAAGCAGAGCGGCAACAGATACATGTTCACTGCTAGTGATGGAAAAATGAAGCTGAGGGCGATTCTTCCTTCAAATCATTACTCCGAGGTGCTGTCGGGGAATATTCAGAACCTTGGTCTTATTCGCATTATTGATTACACTCTCAATGATATTCCCAATAAGTCTGAGAAATATCTCATTGTTTCGAAATGTGAACCGGTTTCTCCCGCGCTTCAAATGGAGATAAAGATCAAGAGTGAAGGTTCTGTTGGGATTCTTTTGAAACCGAAGCAGGAAGTGGTGGCAAAATCTGCTGCTCAGATTGTGCATGAACAGCATGGAAATTCGGCTCCTGCTGCACGAATGGCCATGACGCGTAGGGTACGTCCTCTTGTTTCGTTGAATCCTTATCAGGGTAATTGGACAATAAAGGTTAGTGTTACGAGCAAAGGGAACATGCGTACATATAGGAATGCCAGAGGGGAAGGTTGTGTCTTCAATGTGGAATTGACGGATGAAGATGGTACTCAGATTCAAGCAACAATGTTTAATGATGCTGCGAGGAAATTTTTTGACAAATTTGTTCTGGGAAAAGTTTATTATATTTCAAAGGGAACTTTAAAAGTAGCTAACAAGCAGTTCAAGACTGTGCAAAATGATTATGAAATGACCCTGAATGAGAATTCTGAGGTGGAAGAGGTGGATGGTGAGGCAAGTTTTGTTCCAGAAACAAAATTCAAATTCGTCCCGATTGATCAGCTGGGTCCTCATGTCAATAAGACTGACCTCGTTGATGTAGTTGGAGTTGTTAAGAATGTATCTTCAACAATGAGCATTCGAAGGAAGAGTGACAATGAGGGTATTCCAAAGCGTGACATCACTATTGCTGATGAAACGAAGAAGACAGTAGTTGTTTCCTTGTGGAATGAACTAGCTACTAACATAGGACAAGAGTTACTGGATATTGCTGATAAGTCTCCTGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGCGTTTCTTTGTCAACCATAAGCAAAAGTGCGGTTCTGATAAATCCAGACATACCTGAAGCAAAGAAACTCAGAAGCTGGTATGATTTTGAAGGAAAGGATGCTTCCATGGACTCTGTAGGCTCTGGTTCAAGTCCAATATCTAACAATGGAATTAGATCAGTGTACTCTGATCGTGTGTCTCTCTCTCACATAATCTCAACCCCAATGTTGGGGGATGGCAAGCCTGCGTTTTTCAGCATTAGAGGATATATAAACTTCATCAAGGCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAAAAAGTTACTGAAAGCATTGGTTCTGGATACTGGTGCGAAGGTTGTCAGAAAAACGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCCAAAGTTGCTGATGCAACTGGTGAGGCTTTTATCTCCGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAACTTACGATCACAAGAAGGAGAAGATAATCCATATCAGCTGAAATTGAAGCAAGCTACATGGGTTCCGCATCTTTTCCGGGTCAGTGTTACTCAAAATGAGTATAATAACGAGAAGAGGCAACGGATAACAGCCCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGAGTTCTCCTGGAAGAAATATCAAAGATGAGAGCTTCTCAGTAG 1815 0.4242 MAAKSVTPEAISTLLANPSPDSSSDLPYIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNHYSEVLSGNIQNLGLIRIIDYTLNDIPNKSEKYLIVSKCEPVSPALQMEIKIKSEGSVGILLKPKQEVVAKSAAQIVHEQHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVDGEASFVPETKFKFVPIDQLGPHVNKTDLVDVVGVVKNVSSTMSIRRKSDNEGIPKRDITIADETKKTVVVSLWNELATNIGQELLDIADKSPVVAIKSLKVGDFQGVSLSTISKSAVLINPDIPEAKKLRSWYDFEGKDASMDSVGSGSSPISNNGIRSVYSDRVSLSHIISTPMLGDGKPAFFSIRGYINFIKADQAMWYRACKTCNKKVTESIGSGYWCEGCQKNDEQCSLRYIMVAKVADATGEAFISVFNEEAEKIVGCSADDLDNLRSQEGEDNPYQLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAESRVLLEEISKMRASQ* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2949 604 CDD RPA1_DBD_C 444 599 IPR013955 -
Apr9g2949 604 PANTHER REPLICATION FACTOR A 1, RFA1 6 598 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr9g2949 604 SUPERFAMILY Nucleic acid-binding proteins 158 265 IPR012340 -
Apr9g2949 604 Gene3D - 411 600 IPR012340 -
Apr9g2949 604 Pfam OB-fold nucleic acid binding domain 171 256 IPR004365 GO:0003676
Apr9g2949 604 Gene3D - 270 410 IPR012340 -
Apr9g2949 604 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Apr9g2949 604 CDD RPA1_DBD_B 299 398 - -
Apr9g2949 604 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr9g2949 604 Gene3D - 5 115 IPR012340 -
Apr9g2949 604 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 598 - -
Apr9g2949 604 Pfam Replication protein A OB domain 286 384 IPR031657 -
Apr9g2949 604 Gene3D - 156 265 IPR012340 -
Apr9g2949 604 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr9g2949 604 Pfam Replication factor-A C terminal domain 447 593 IPR013955 -
Apr9g2949 604 SUPERFAMILY Nucleic acid-binding proteins 275 404 IPR012340 -
Apr9g2949 604 SUPERFAMILY Nucleic acid-binding proteins 426 600 IPR012340 -
Apr9g2949 604 CDD RPA1_DBD_A 159 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2949 Apr-Chr9 36383214 36386291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2949 5 604 Core DNA Replication Machinery Family AT5G08020 71.215 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2949 K07466 - gmx:100777091 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2949 9 36383214 36386291 Apr9g2949 9 36383214 36386291 ECH