Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2944 ATGATTGAAAGTTCAAGTAGAGGTTATGAAGGGAACCAACAACAAGAGGGTGAATTCATTAAAATTGAGAAGTTATCCAAGGCACCCTCGACCTCAAGACAATGGTCAGCGTTCAGAAATCCAAGAATTGTGCGTGTCTCACGTTCTATGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTTAGGGACAGGAGGATTAGGTTGTCTGTACCCACAGCAATTCAGTTATATGATCTTCAAGATAGGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGCCACCAAATCTGATATTGATAAGCTTCCACCACTTCAAATTCCTCATTATTTTGCTCAATTTCATCAGCAAAACCTATTGCCAGGTACATCTCATCAGTTTTCTCTTGGAGGCTTCTATGATGCTGCAAATTCCACATTTATAAAGGATGGGGGAAATCAAAACCACATGGCAAAGTATTGGGATATTGATTCACTAAAAGGCAAGGAATTAGCTGAAAGTGCGTCCATCTCCCAAAGAGGAAAGTGCTGGATCAAAACAAATGAACAAGAAAATCAAGATGGAGTTGGTGCCGGTACTCATAATAGAGAAGAGTCAGCACAGAGGTTCTTCCCCATTGGAACTAACTCTTCTTTACCTGGTTTGTTAAACAATGCCATGACATATAACTCCTACCACCATTCAGAGCCTTCAACTCTATCTTTATCCCAATTTGGAAGCCATGGATTATTTCCTTCTTATCCAAACAGTGGCAGTGGTGTGCAATTTTCATCTTCTAGCTTGTCTGTACCATCTGGTTCCCAGTTACTTTTTTGCCCACCATCTGCTACACCATCGGCTTTTTACTCAGTGGAAAGTGATCCAAGACAGTCCAACAATAATATTCAGATCTCGAACTCAAGTTCCCAAATCATGATGCCTCATCCTCTCATTCAATCTCTTCATTCAATCAATTCACCTCTAAGACTCCTTCCAACACCGTTTAGTTCCAAGCTTCTTGATTCTGATACTAATAATCGTAGCCCACCAGGTAAGGGTAGTACTCGTTCTTGA 1077 0.4141 MIESSSRGYEGNQQQEGEFIKIEKLSKAPSTSRQWSAFRNPRIVRVSRSMGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLEATKSDIDKLPPLQIPHYFAQFHQQNLLPGTSHQFSLGGFYDAANSTFIKDGGNQNHMAKYWDIDSLKGKELAESASISQRGKCWIKTNEQENQDGVGAGTHNREESAQRFFPIGTNSSLPGLLNNAMTYNSYHHSEPSTLSLSQFGSHGLFPSYPNSGSGVQFSSSSLSVPSGSQLLFCPPSATPSAFYSVESDPRQSNNNIQISNSSSQIMMPHPLIQSLHSINSPLRLLPTPFSSKLLDSDTNNRSPPGKGSTRS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2944 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 349 IPR005333 GO:0003700
Apr9g2944 358 MobiDBLite consensus disorder prediction 336 358 - -
Apr9g2944 358 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 1 349 - -
Apr9g2944 358 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Apr9g2944 358 Pfam TCP family transcription factor 52 154 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2944 Apr-Chr9 36337377 36339347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2944 36 214 TCP Transcription Factor Family AT5G60970 52.850 2.81e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr9g2944 TCP 5.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2944 - - pvu:PHAVU_003G183700g 483.411