Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2937 ATGGAATCTTGGAGCTATGTTCCTCAAGAAAAGGAGTATGTCTCCAATGACACACTGTCACCTCCCAACACACTTGGGAGAAGCAAAAATTTATTCTTGGGTTGGGAACTGAAAACCCCATCAAGTTTTTCCAACGACATGTTGCCTTTGGGTCAACAAAACACTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCCGAAATGTTGGGGAAACAGTTGTCTGATGATCTAATTGGTAGTGTTCCAAGCAGAAAGGTGGATGGTAGACACAGTAGCAGAAACACTAGTACTGTTGTGGATGCCCCAAATGCATTTTCTCAAAGAGGGGACTCAAATTCCAAACTTTCAAACTCTGTGGTGGACTCCAATACCCGGGATTCCCTCATTGACTTGAAGCTGGGTCGTTTTGCTGATCATGGGGATGCCATTGATCCAGCATTTTCCAAAGCAGCACCAATATTGTCTTCTTCTGAGTCATCAACACCCCCTAAGAGAGTGAGAGCGTCGGGGGTTCACTCTCAGATTGCATACTGCCAAGTCTATGGTTGTAACAAGGATCTCAGCTCCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTATAGTCAATGGCATTGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGTTGGCTGAATTTGATGATGGCAAGCGCAGCTGCCGTAAACGCCTTGCAGGCCATAATGAGCGTAGAAGGAAACCACAAGTGGGTATTCACTCCGGAAAGTCTGGGAGGTTGCTTCATCCATGTGATAGCAGATTCCAGGGAACCATGCTAACATCAACATCTTTTATCCGCCCAGAGATGCTCCCAAATGAAGTCATGCGTTCTGAGAAATATGGTATGAGTGGCTTCTGGAGACCTATAAAGGCAGAATACGTGGCTGGTCCTAGGCATCTTTCTTCTATGCCTATTACCAATGGGCATCCTGAGTCAAGATCTCTATTTCTTTCGTATAATGATAAACAATTTCCCTTTCTTCATGAAAATGGTGCTACATCCACCACAGGAAGCATCTTCTGTGAAAACAACCAATATCCACCGACCCTTGGGGCCCAAATTTCTGGTTTAAGACCACTATTCCAGGGAACTTCGTTAGGAAGTGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCAGGGATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCTTGGTTATTCCAAGCAGTCATAGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCATCTAACCGAGTGTCAGATAGTTTTCCATCGGAATTAAATCCTGCGGATGGAAGTCATCTCAGTCCTGTATTGATGTCAGACAATAATGATATTGTTAACTTCGATATGGCAGATGGAATTTTCCAAGGTTCGGATTTCATGAATGTGAAAGATCGTCTTTCCTGTGAAGATGGTGCAACCATTGACTTGCTACAGCTGTCATCACAGCTTCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGATTAAGCAAGAGAATGATTCTTTTTGCACTCTTCGGATTACTTAA 1668 0.4365 MESWSYVPQEKEYVSNDTLSPPNTLGRSKNLFLGWELKTPSSFSNDMLPLGQQNTENQGFEELGFPEMLGKQLSDDLIGSVPSRKVDGRHSSRNTSTVVDAPNAFSQRGDSNSKLSNSVVDSNTRDSLIDLKLGRFADHGDAIDPAFSKAAPILSSSESSTPPKRVRASGVHSQIAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKSGRLLHPCDSRFQGTMLTSTSFIRPEMLPNEVMRSEKYGMSGFWRPIKAEYVAGPRHLSSMPITNGHPESRSLFLSYNDKQFPFLHENGATSTTGSIFCENNQYPPTLGAQISGLRPLFQGTSLGSEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHSHHYNMSQVSEKIGISSQTSSNRVSDSFPSELNPADGSHLSPVLMSDNNDIVNFDMADGIFQGSDFMNVKDRLSCEDGATIDLLQLSSQLQRVEHQRQSLQIKQENDSFCTLRIT* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2937 555 MobiDBLite consensus disorder prediction 82 119 - -
Apr9g2937 555 Gene3D - 169 239 IPR036893 GO:0003677|GO:0005634
Apr9g2937 555 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 555 - -
Apr9g2937 555 Pfam SBP domain 178 251 IPR004333 GO:0003677
Apr9g2937 555 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Apr9g2937 555 MobiDBLite consensus disorder prediction 455 474 - -
Apr9g2937 555 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 555 IPR044817 GO:0003677
Apr9g2937 555 MobiDBLite consensus disorder prediction 92 119 - -
Apr9g2937 555 MobiDBLite consensus disorder prediction 455 480 - -
Apr9g2937 555 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Apr9g2937 555 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g2937 555 Coils Coil 523 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2937 Apr-Chr9 36243753 36248863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2937 129 293 SBP-box Gene Family AT1G69170 54.545 8.98e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr9g2937 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2937 - - gmx:100817547 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2937 9 36243753 36248863 Apr9g2937 9 36243753 36248863 ECH