Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2936 ATGGGAAGGGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTAACATTTGCTAAGAGAAGAAATGGATTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTGCATTGGAGACCACCCGACCAATTAATGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAAGGTTGAAGTCCTGCAACGTTCGCAAAGGAACCTGCTCGGGGAAGATCTTGCACAAATGAACACAACTGAGCTCGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACAACCGGGAAACAGTGCTTGTTGAAACTAATAACGTGTTAAGGAGTAAGTTGGAAGAAACAAATAATTCACAGGTTCCAGCAGGAGGGGCTTTGGAAGGTGGAGGGCCTAACATCCATTACACCAATTTTCCATCGCAAACAGAGGGGTTTTTCCAGCCTGTGGGAGTGAATCCCAACTTGCAAATTGGATACAACCCAACTGGTCCTGACGACGGAGCTTCATCCTTAAATATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 723 0.455 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKAKVEVLQRSQRNLLGEDLAQMNTTELEQLENQLEAALRNIRSTKTQFMLDQLADLHNRETVLVETNNVLRSKLEETNNSQVPAGGALEGGGPNIHYTNFPSQTEGFFQPVGVNPNLQIGYNPTGPDDGASSLNMHGFASGWML* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2936 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g2936 240 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Apr9g2936 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Apr9g2936 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Apr9g2936 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g2936 240 Coils Coil 116 143 - -
Apr9g2936 240 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr9g2936 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g2936 240 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2936 Apr-Chr9 36213519 36219329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2936 1 240 MADS-box Gene Family AT5G15800 54.962 1.30e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g2936 K-box 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2936 K09264 - gmx:100797819 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2560 4 34416667 34421682 Apr9g2936 9 36213519 36219329 ECH
Apr6g0285 6 2923105 2928826 Apr9g2936 9 36213519 36219329 ECH
Apr9g2936 9 36213519 36219329 Apr9g2936 9 36213519 36219329 ECH