Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2935 ATGGGAAGAGGAAGAGTTCAGTTGAAGAGAATCGAGAACAAGATCAATAGGCAAGTAACCTTCTCAAAGAGAAGGTCTGGTTTGCTTAAGAAAGCCAACGAGATCTCTGTGCTTTGTGATGCAGAAGTGGCTCTCATAATCTTCTCCACTAAAGGCAAGCTTTTCGAGTACTCCAGTGACCCTTGTATGGAAAGAGTTATTGAACGGTATGAGAGGTATTCGTATGCGGAGAGGCAGCTTGTAGGAGATGATCAGGCCCCAAATGAAAACTGGGTTATAGAACACGCGAAGCTGAAGGCTAGAATGGAAGTTCTACAGAGAAATCAAAGGAATTTTAAGGGAGAAGAGCTGGATAGCTTAAGTATCAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCCGCTATCAAACGCATCAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACATAACAATTTGCTCGCCAAGAAGATTAAGGAAAAAGAGAAGGCGCTGGCCCAACAGGAGCAAAGGGGGGTTCATAATAACGCGGATATGAACTCTGTTCTTGTAACTCAGCCGCTGGAGTACTTGAATATTGGATGTAATGAAGAAACTCCAACGCCAACTCGAGCTAACACAATTCTTCCCCCTTGGTTGCCTCGTCCTACAACTGAATAG 702 0.4316 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLFEYSSDPCMERVIERYERYSYAERQLVGDDQAPNENWVIEHAKLKARMEVLQRNQRNFKGEELDSLSIKELQNLEQQLDSAIKRIRSRKNQVMYESISELQKKDKALQEHNNLLAKKIKEKEKALAQQEQRGVHNNADMNSVLVTQPLEYLNIGCNEETPTPTRANTILPPWLPRPTTE* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2935 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 Coils Coil 88 115 - -
Apr9g2935 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 196 - -
Apr9g2935 233 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Apr9g2935 233 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Apr9g2935 233 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g2935 233 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Apr9g2935 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Apr9g2935 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g2935 233 Coils Coil 154 185 - -
Apr9g2935 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g2935 233 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2935 Apr-Chr9 36193783 36199560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2935 1 222 MADS-box Gene Family AT1G26310 56.904 9.38e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g2935 K-box 3.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2935 K09264 K09260 gmx:100805348 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1013 1 16611095 16619346 Apr9g2935 9 36193783 36199560 ECH
Apr4g2561 4 34432099 34443163 Apr9g2935 9 36193783 36199560 ECH
Apr6g0286 6 2956873 2966322 Apr9g2935 9 36193783 36199560 ECH
Apr9g2935 9 36193783 36199560 Apr9g2935 9 36193783 36199560 ECH