Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2925 ATGTCGTCGTCGTTGGGATCCCCAAAGAAGCGGCTGAAATTGGAAGCGGAAGATGACGAAGAGATCGTTTATTGCGGGATTTGCTATGGCGAGCGTGGGGTTGCGATCGCCGGGGAAATCGATTGCTGCAACCACTACTTCTGCTTCGTTTGCATCATGGAATGGGCGAAGCACGAATCTCGATGCCCACTTTGTCGCCAGAGATTCTCCAACGTCCGCAGGCTCCCTATGCATGGCGTCTTTTCCTCCTCGAGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTATCATCCATATGGAAATATGGCAACTGGTCCTGTTGATCCCTATGCTGAATCCAAATGTTGTATCTGTCATACTGGGACAGATGAAAATCTTCTACTACTTTGTGATCTTTGTGACACTGCTTCACACACATTCTGTGTTGGCCTAGGCTATACTGTTCCCGAAGGTGACTGGTTTTGTCATGATTGTGCTATTTTGCGGAAGGCCAATACAAATGAAGAATCAGACCAACAAAATGTTGTGCCAGCAGCTGAGTCAAGTGTAACAATCTTTGATATTGTCAGAGAAACAGGCAACCAGGTGGTTAGAAGACCAAGGGCATCTCCTTTACAATATAACCAGTCATCTCCTTCTGTTATTCCTTTACGTGATAGGATGAGTAGATTCAAAGGTAAAAATCCTGTCTTAGATGTCCATAACGCGCAGCATAATGTACAGGCACTTCGCGACAATTGGAATGCTTTGAGAGGTGGTTCATTACAGTTTCATTGCAATTCATTTCAACCCGGAAGCACAGTTAGTCAAGAAAAATATTGTAGTTCACTATCACTTGTCAAATTAAATGATTCACATTCTATGGCTTCCACGAGCCTTCAACAATCCACTGTCCAAGGTGGTCCCTCTAGCAACATGGTGAATGAGACATGCTTTAAAGATGCTGACAAGGCCTGGAAAATGATGGACAAGGCAAAGAAGATTCAACAGACTCGTCACAGAGCTAGCAGCATTCCACCGGGAGCAGCAGATAAACCCTCATGCAGTGGAGGAACAAGGAAAATATCATTTGCACCTTGTAATTACCCAGAATTGAAAAATCAACATTCCAAAGCATTAGATGTAAGGAACACTAAAATGGAAAATCACAGGTCTCTGAAATTTGAAGAGAAAAAGAGAAGTAGGGATACATGTGAGGAGATGACACAACATGTGAGAGACCGTACCCCTCATTCAGAAGGATACCGTGAATGCCCATTGCCCAGAAAGGGCCATACTAATATCCAGTGTGTTCCCTGTCATGAAGATGGAGAGAAAAATGTTGCTAAGAAAGACAGCTGGCCTGCTTGCTTGGTAACTTCACTGGATTCAGCTCCCTCCCGTTGCAGGTCTGGTAAGGATGTGGATCTTGTCCATGAGGAAAAGAGGTTGACTAAAAGCTCTGGGGATGGCAACACAAAAAAAATTGACGATGCAAAAACCGAGATTCAGTCTCTTGTTAAACTGAATTTGAAGTTCCTTACTAGAGATAAACATATTGGTGTCGAAACCTTCAAGGTAGTTGCGAGGCAGGCCACCCATGCCATCTTGGCTGCTTGCAGTTCCGAGCAGCAAAAGTCTAATACATACTCGTCTAGCTCAATATGCAGCCATGCCGAACACACTCCCCAGTTTCAGAAATCTACTTTAATGCCTAATTCTTGCCGACAATGCTTTTATGTCTTTGTAAACAATGTTGTCAATTCCATCAAGTTAGAGAAAGCGGGTTGCGCTTGA 1776 0.4414 MSSSLGSPKKRLKLEAEDDEEIVYCGICYGERGVAIAGEIDCCNHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMHGVFSSSRDVKVPLRDQVYHPYGNMATGPVDPYAESKCCICHTGTDENLLLLCDLCDTASHTFCVGLGYTVPEGDWFCHDCAILRKANTNEESDQQNVVPAAESSVTIFDIVRETGNQVVRRPRASPLQYNQSSPSVIPLRDRMSRFKGKNPVLDVHNAQHNVQALRDNWNALRGGSLQFHCNSFQPGSTVSQEKYCSSLSLVKLNDSHSMASTSLQQSTVQGGPSSNMVNETCFKDADKAWKMMDKAKKIQQTRHRASSIPPGAADKPSCSGGTRKISFAPCNYPELKNQHSKALDVRNTKMENHRSLKFEEKKRSRDTCEEMTQHVRDRTPHSEGYRECPLPRKGHTNIQCVPCHEDGEKNVAKKDSWPACLVTSLDSAPSRCRSGKDVDLVHEEKRLTKSSGDGNTKKIDDAKTEIQSLVKLNLKFLTRDKHIGVETFKVVARQATHAILAACSSEQQKSNTYSSSSICSHAEHTPQFQKSTLMPNSCRQCFYVFVNNVVNSIKLEKAGCA* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2925 591 Pfam PHD-finger 115 159 IPR019787 -
Apr9g2925 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 183 IPR013083 -
Apr9g2925 591 MobiDBLite consensus disorder prediction 388 420 - -
Apr9g2925 591 MobiDBLite consensus disorder prediction 330 349 - -
Apr9g2925 591 ProSiteProfiles Zinc finger RING-type profile. 25 66 IPR001841 -
Apr9g2925 591 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 16 588 - -
Apr9g2925 591 SMART ring_2 25 65 IPR001841 -
Apr9g2925 591 PANTHER F18C1.6 PROTEIN 16 588 - -
Apr9g2925 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Apr9g2925 591 SUPERFAMILY FYVE/PHD zinc finger 108 161 IPR011011 -
Apr9g2925 591 SUPERFAMILY RING/U-box 17 73 - -
Apr9g2925 591 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Apr9g2925 591 SMART PHD_3 114 159 IPR001965 -
Apr9g2925 591 ProSiteProfiles Zinc finger PHD-type profile. 112 161 IPR019787 -
Apr9g2925 591 Pfam Ring finger domain 25 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2925 Apr-Chr9 36104275 36107272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2925 106 163 C2H2 Transcription Factor Family AT3G01460 35.593 4.50e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g2925 PHD 1.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2925 - - gmx:100808541 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2925 9 36104275 36107272 Apr9g2925 9 36104275 36107272 ECH