Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2924 ATGGCCGATGTCACCACCTACCTCCGCCACCACCGCTGCGACCCCGACGACGACCAAACCCTTATCCCTTTCCCCTATTGCTCCCCTCACGATTTCGATTTCGATTTCGATTTCTACTCCTCCGATCCCGAATTCCCCCCCAACCCTTTCTCCCTCTCCGACAACGAAAACAAGGTCAATTTCGTCATGGATCTCTTCCACCAACGCGTTGAACAGTCCCAGCTCTCCGATCCGCTCCCTAACCATTCTCTCTTCGGCGTCATCGACGGCTTCCCCCTCGATCTAGCCTTCGCCGCCGCCGACGACGCCGACGACTTCGTCGGAACCACGCTCTCCGGATCCCACTCCCCTGACCACCGCGTTCCCTTCGTTGCCTTCTCTGACACCGACGAGGACGAAGCCAACGTCGTTTTCGGCATCTGCCCCCACTCGGACGATGACTACAACGAAAACGACGACGTTTCCAGCATTCCTCTCTGCTGGGACTCGCTTCAATTAGAGGATAACAGAGACAACTACGAAGATTTCGAGTGGGAGGAAGTGGACGGTAGAGTGGACGAGAGAGAGGTTCTGAACATGCTCGCCGTCGAAGACGATAGGTCAGTTTCCGTTTCGCCAATAACAGAAGTCATAGAAGATGAAGAAGAAGAGGAAGTGAACCTTGGTGAGAATCTGGAGTGGCAAGTGTTGTTGAATACAAACCCTGATTTGGAAAACGATACAGAGCCTTATTTCGCTGATGCTGATGCATACATTTACACTGCAGAGTATGAAATGACGTTTGGGCAATTGGGTGAGAACGATAACCCCATAATGGGAAGGCCTCCTGCTTCTGTTTCCGTTATGCAGAACCTTCCATCGGTGGTTGTGACCAAAGATGACGTCGATAGTAACAATGCTTTCTGTGCTGTTTGCAAGGAGGAATTTGGTGTTGGGGAATGCCCGAAGCTGTTGCCGTGTTCGCATCGTTATCATGGTGATTGCATCGTTCCTTGGTTGGGGATTCGGAATACTTGCCCCGTTTGTCGCTACGAGTTTCCCACTGATGACGCTGATTATGAGCGTAGGAAGGCCCAGAGATCGGCCCGGAGCATGTGA 1098 0.5237 MADVTTYLRHHRCDPDDDQTLIPFPYCSPHDFDFDFDFYSSDPEFPPNPFSLSDNENKVNFVMDLFHQRVEQSQLSDPLPNHSLFGVIDGFPLDLAFAAADDADDFVGTTLSGSHSPDHRVPFVAFSDTDEDEANVVFGICPHSDDDYNENDDVSSIPLCWDSLQLEDNRDNYEDFEWEEVDGRVDEREVLNMLAVEDDRSVSVSPITEVIEDEEEEEVNLGENLEWQVLLNTNPDLENDTEPYFADADAYIYTAEYEMTFGQLGENDNPIMGRPPASVSVMQNLPSVVVTKDDVDSNNAFCAVCKEEFGVGECPKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSARSM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2924 365 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Apr9g2924 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 349 IPR013083 -
Apr9g2924 365 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 99 361 - -
Apr9g2924 365 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 87 - -
Apr9g2924 365 Pfam Ring finger domain 302 343 IPR001841 -
Apr9g2924 365 PANTHER - 99 361 - -
Apr9g2924 365 PANTHER - 15 87 - -
Apr9g2924 365 SMART ring_2 302 342 IPR001841 -
Apr9g2924 365 SUPERFAMILY RING/U-box 281 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2924 Apr-Chr9 36090998 36092483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2924 156 349 C3H Transcription Factor Family AT5G60820 49.528 4.62e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2924 - - adu:107469048 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2924 9 36090998 36092483 Apr9g2924 9 36090998 36092483 ECH