Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2908 ATGGAAAACATAGAAACCTCAAAACTTCCCCACCAAACTCAAAACCAAAACAAGAATCTTTCTCTGATGCCGATTGAAATAGACGAGTGTTACGGGAAGAGAGTTATGAAGAATCCAAAAAGAGTAAACAAGAGTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCAGAGATCAAGGACTCTTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGATAGAGCAGAAGATGCTGCTTTGGCTTATGACTTTGCTGCAAGGCTTCTTAGAGGAAGAAATGCAAAAACAAACTTTCCAAACCCTGGAGTCATCAACACTCATGAAGAAGACTGCACTATTTTGGGAAAGAATCCTAGGGCTTACCAGCTTCTCAAGCATGCAGTACTGATGAAAAACCATGCACTTTCCTCATCTGTTTATTCAACAGTCATGCCTTGGAAAAACCAGATCATGAGAAATGAGTTTGACACTCTTGTTGAGGAAACCATAGTTTGCTCCATTCCTGAACAAGGTTCCGGGTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGTGCTTCTCACTGTCAAGATAATGAAGAAACCCACTAA 639 0.4006 MENIETSKLPHQTQNQNKNLSLMPIEIDECYGKRVMKNPKRVNKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALAYDFAARLLRGRNAKTNFPNPGVINTHEEDCTILGKNPRAYQLLKHAVLMKNHALSSSVYSTVMPWKNQIMRNEFDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASHCQDNEETH* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2908 212 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Apr9g2908 212 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Apr9g2908 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 209 - -
Apr9g2908 212 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Apr9g2908 212 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2908 Apr-Chr9 35968232 35970845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2908 33 106 AP2-EREBP Transcription Factor Family AT5G19790 62.162 2.59e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g2908 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2908 - K09286 gmx:100807374 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2908 9 35968232 35970845 Apr9g2908 9 35968232 35970845 ECH