Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2889 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTCTTCAAAAGAGGAAACCAATTCCAATTACGCCCTCCCTCCTCCTCCTTTGTCCTTTTTTCAATTCCCCTTTGAAGACAATATCTTCCTCGAACAACACCATGACTTGTTACTTCACCACCACCAATCTCTAGCAGACCCTCCACTTGTTAACATGGAGCTTCCACCAATTATTCCTTGTGCACAAGGCACCACCACCACAATGATGGATCACACACCTAGAAAGAGATCCAGCAAGAGAGATCGCCACAGTAAAATCAACACCGCACGAGGACTCAGGGATCGAAGAATGAGGTTGTCCCTTGAAGTTGCCAAGAGCTTTTTTGGCTTGCAAGACATGCTAGGCTTTGACAAAGCCAGCAAAACTGTGGAGTGGTTACTGAACCAAGCCAAAGTTGAAATCAAACAACTTGTTAGAGAGAAGAGTGGTGGTGGTGCTGCCAAGAGTGCATCCTCAACTTCGGAATGTGAAGGGGTGTCAAGCTTGGACGAGGTCGTGGTAAGTGGAGTTAACCAAGAACAAGAGAGGGAGCCACACGTGAAGAGAAGAACGAGTAAGCTTTGTAGAAAAAGTGCATTCAATCCTATTGGTAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAACGTACAAGAGAAAAGATGAGGACTCGGAACCTGAACCGTTTGAGTTCATGGAATCCCTTTGAAACGGTAGAAGAATCTGCAGGTACTCAGAGCCAAAGCGTGAATCATCCCTCCTTGGATGTTCAACTTGCTGAGGCCGAAGAACCAAGTTCTCACGCGAAAGAGCATTTGGGAACCGTAGAGGACATGGCGCACGAAGATAATTCTTTGGTGATCATGAGCAAGTGGAGCCCAACTGTGATGTTCAATTCTCTCAATAACCCAGCAATCCTTCAAGAGCATCAATATGCAGAATTTCAGTCCTTGGGAAAATCTTGGGAGGCCTACAACAATCACATCTAA 1077 0.4531 MYSSNTSLNGNDLISYPNQPFCFRPFSFESNPTYNSSKEETNSNYALPPPPLSFFQFPFEDNIFLEQHHDLLLHHHQSLADPPLVNMELPPIIPCAQGTTTTMMDHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKSFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLVREKSGGGAAKSASSTSECEGVSSLDEVVVSGVNQEQEREPHVKRRTSKLCRKSAFNPIGKESREKARERARERTREKMRTRNLNRLSSWNPFETVEESAGTQSQSVNHPSLDVQLAEAEEPSSHAKEHLGTVEDMAHEDNSLVIMSKWSPTVMFNSLNNPAILQEHQYAEFQSLGKSWEAYNNHI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2889 358 PANTHER TRANSCRIPTION FACTOR TCP18 14 328 - -
Apr9g2889 358 MobiDBLite consensus disorder prediction 230 253 - -
Apr9g2889 358 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Apr9g2889 358 MobiDBLite consensus disorder prediction 262 281 - -
Apr9g2889 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 328 IPR005333 GO:0003700
Apr9g2889 358 Pfam TCP family transcription factor 113 253 IPR017887 -
Apr9g2889 358 MobiDBLite consensus disorder prediction 204 253 - -
Apr9g2889 358 ProSiteProfiles R domain profile. 233 250 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2889 Apr-Chr9 35803496 35804859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2889 110 247 TCP Transcription Factor Family AT3G18550 46.541 3.18e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr9g2889 TCP 6.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2889 - - gmx:100803669 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2614 4 34905179 34906808 Apr9g2889 9 35803496 35804859 ECH
Apr6g0366 6 4148100 4151955 Apr9g2889 9 35803496 35804859 ECH
Apr9g2889 9 35803496 35804859 Apr9g2889 9 35803496 35804859 ECH