Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2887 ATGAGCTGGCGCAGGGTGTTGAAGTCAGCGCAAGCTCTCGCTGCACACACCTTTCTCTTATGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCATCATATCTCATGTTCTTGGTGGATAATATTTTTACCTCTTTGGATGTTCCATGGCATTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCTCGTAATCGAAATTGGGCACCATGCCATGCCGTCGTTGCAATGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGTTTAGATGCAGTAGATCTAAAGATTGTCTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAGGGCTCTAATGCCAGGCGATGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATTTCTATGGTGTTCTTCATTGCTGCTACAGTCTTCACACTCCTCAAACTGAGCGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTCGTTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTCATTCATAGAACTTCAAGAGAAGCCAGTAGTTCATCTTCAACTACGATTAGATATCTTGACTGGAACAGTGGTTTGGTGGTTTCTTCAGAGGAAAATCAACGTCAGGGGAGAATGTGTAGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTCCCAATTATCGTATTCCAGGTTCTGCTTGTTATGCATCTAGAGGGTACACCTGCTTGTGCTGTATATATACCTCTTCCAGTTCTTTTCTCTCCCATTTTCCTACTGCATGGAGCTGGTATACTGTTATCTGCATCTAAATTAGTTGAGAAACTTGTGCTTCTGGTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGATTCTTGCGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGACGAAGGAAGTCGAGAAGAACAGGCACGGTTGTACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGACATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCCGCTCTTGGTGAACAAACTGAAATTACAAAATACAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTATTATGCAGAATTTGTTTTGAGGAAGAGATTAACGTTGTATTGCTCCCATGCAGGCATCGTGTCCTTTGCAGCATATGCTCAGAGAAGTGTAAGAGGTGCCCCATTTGCCGGGACTCTATTGCTGAGCGCTTGCCTGTGTTTGATGTTTAG 1386 0.4293 MSWRRVLKSAQALAAHTFLLCFTLFLVLKLDHHISCSWWIIFLPLWMFHGIVARGRFSLPAPSAPRNRNWAPCHAVVAMPLLIAFELLLCIYLESLDAVDLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFVIAECFAFLVCTKWSNPVIHRTSREASSSSSTTIRYLDWNSGLVVSSEENQRQGRMCSLQDIGGHFMKVPIIVFQVLLVMHLEGTPACAVYIPLPVLFSPIFLLHGAGILLSASKLVEKLVLLVRSGAGGGIYFRFSSRAHDCLGFLRHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPDIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRICFEEEINVVLLPCRHRVLCSICSEKCKRCPICRDSIAERLPVFDV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2887 461 Pfam Transmembrane Fragile-X-F protein 28 286 IPR019396 -
Apr9g2887 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 459 IPR013083 -
Apr9g2887 461 ProSiteProfiles Zinc finger RING-type profile. 414 449 IPR001841 -
Apr9g2887 461 SUPERFAMILY RING/U-box 405 455 - -
Apr9g2887 461 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 461 - -
Apr9g2887 461 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 461 - -
Apr9g2887 461 SMART ring_2 414 448 IPR001841 -
Apr9g2887 461 Pfam Zinc finger, C3HC4 type (RING finger) 411 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2887 Apr-Chr9 35771633 35779150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2887 1 461 C3H Transcription Factor Family AT1G73950 71.674 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2887 - - gmx:100791390 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2887 9 35771633 35779150 Apr9g2887 9 35771633 35779150 ECH