Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2885 ATGTCATCTAGTGGAACCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCCATCGCTTTGCATTGGATTGAGGAAGCCTCAAAAGACCAATGGGAGAAGATTGCTTCAGCTGTTCCCAGCAAAAGCATAGAAGAAGTGAAGCAACATTACCAGGTACTAGTAGAGGATGTAAGTGCAATAGAGGCTGGTCACATATCATTCCCAAATTATGCTACTGAAGAAACCACATCTTCAAATAAGGATTTTCATGGCTCTTCAAAGGCTTCAACTTCAGATAAGAGATCAAATTGTAATTATGGAAGTGGTTTTTCCGGGTTAGGACATGACTCCACCACTCATACTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACTGAGGAGGAGCACAGGCTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCCACTCAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGAGACAGAAGGAGGTCTAGTATCCATGATATTACTAGTGTCAACAATGGAGATGTGGTAAGTAATCAAGCACCAATTACAGGCCAACATACAAGCACAATATCTTCAAGTACAATGGCTGTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATATACCTGCTGGTTTAGGCATGTATGGAACACCAGTTGGCCATCCTGTGGCAGCTCCACCAGGGCATATGGCATCAGCAGTTGGAACTCCTGTCATGCTTCCTCCTGGACCCCACCCCCATCCTCATGCCCATCCTCATGCCCATCCTCATCCACCTTATGTTGTCCCTCTTGCTTATCCAATGGCTCCTCCAACAATGCACCAATAA 921 0.4343 MSSSGTIWSYEEEKAFENAIALHWIEEASKDQWEKIASAVPSKSIEEVKQHYQVLVEDVSAIEAGHISFPNYATEETTSSNKDFHGSSKASTSDKRSNCNYGSGFSGLGHDSTTHTGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVVSNQAPITGQHTSTISSSTMAVGQSMKHRVQPHIPAGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHAHPHAHPHPPYVVPLAYPMAPPTMHQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2885 306 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Apr9g2885 306 SMART sant 131 181 IPR001005 -
Apr9g2885 306 SMART sant 4 58 IPR001005 -
Apr9g2885 306 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Apr9g2885 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Apr9g2885 306 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Apr9g2885 306 CDD SANT 8 56 IPR001005 -
Apr9g2885 306 CDD SANT 134 179 IPR001005 -
Apr9g2885 306 Gene3D - 1 69 - -
Apr9g2885 306 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Apr9g2885 306 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Apr9g2885 306 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Apr9g2885 306 PANTHER TRANSCRIPTION FACTOR KUA1 1 305 - -
Apr9g2885 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Apr9g2885 306 MobiDBLite consensus disorder prediction 76 121 - -
Apr9g2885 306 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Apr9g2885 306 PANTHER TRANSCRIPTION FACTOR MYBS1 1 305 - -
Apr9g2885 306 MobiDBLite consensus disorder prediction 76 133 - -
Apr9g2885 306 Gene3D - 133 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2885 Apr-Chr9 35760525 35762011 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g2885 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2885 - - gmx:100812196 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2885 9 35760525 35762011 Apr9g2885 9 35760525 35762011 ECH