Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2872 ATGTCTCATCTCAACTGGGAAGCTGATAAAATGTTGGATGTGTATATCTACGATTATCTTAAGAAGAGACAATTGCATGCTTCTGCAAGAATATTTCAGGCTGAAGGAAGTGTTTCAATGGATCCTGTTGTTATAGACGCACCTAATGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGACAAATCAGAAACACTCAGAAGCAGCAGCATCTTACAGTAAGAGCCAACAAAGTAAGGCTCGAGAAATGCAGAGGCAACTAGAGCAAGAGCTTCTGAATGCAAACCCAAATCAACAAATGCATATGCAGCTCTTATTGCAGAAGTATGCACAGCAGCAGCAAAGTATGGGTGGAACACAGCTTGTTAGTGGCAGTGATAGCTGTCCTATTAGCAATGATCCTTTGATGAGGCAGAACCAGGCAACTTTAAATGCTATGGCAACAAAAACGTATGAGGACAGGTTGAAGCTTCCACTTCAGCAAGATGCTTTAGATGGTGCGACCATAAAGCAAAAAGTAGCTGATAATGTTGGTCAGCATCTGGACCCAAACCATGGGTCATTGTTGAAAGCAGTAGCAGCAACCACTGGTAGACAGGCTACAGGGCAGAAATTGCTCAGTGTTCCTAGCATTTTACTGGGGAATAATCAACAAGTTCAAAATCGGAACCAGAAACTTCCAGTGTCTACACAAGACATAAAGAGTGATATGAATGCAATGCCGAGGTCTCAAGCTGTTGTTCCAGAAGGATCCTCTATCGGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGGATTTCTCCAGCAAAATAATTTGATGCAGTCTCTGCAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGCTACAGGCACAACAAAATTTAGTTTCTCCTTCTGCCGGTGATTTTGAAAGCAGAAGGCTCAGGATGCTTCTTAATTGTCAAAATACGGGTCTTGGGAAAGATGGTCAATCTAATTCCGTAGGTGATTTGATGCCTAATAATGGAACACCTGCACAAGTTGGTTCCCCTGTATTGCCTCGTCCAGACTCAGTTATGTTCCCTAAGCAACAAGTTCAAAAGAGTAGTCAGCAGGTTCAACAATATTCACAGCATCCTCTTTCAAGCCAGCAGTCTCAGAGTCTCCAGCGGCAAGAAAAAATTAGTCCTGGAAGCATGACAGTAGATGGCAATGTGTCCAGTACCTTACAAGGAAATGACCAGGCTTCCAAAAGTCAAATTGGGCGAAAGCGAAAGCCAGCATCATCTTCAGGTCCTGCCAATAGCTCTGGAACTGCAAACACCATAGGACCATCTGCCAATTCACCTTCCACACCATCTACACAAACACCTGGAGACATGATGATAATGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGTCATCGCTTATGTTTGGTACCGATGGTTTGAGCTCACATACATCAGCACAAAATCAATTGGCTGACATGGACCAACTTGCGGGTGATGGATCTATGGGTGACAATGTTGAGTCATTCTTATTACTTGATGATACAGACCCTACAGAAAAAGTTGGCAAAGGATTTTCATTCAAGGAGATCAAGCATATAATGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTGCTTGCTACAGGTGGCCATGATAACAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTCCAGGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCTTGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAAGGTTTGGGATGTTGATAATCCAAGTTATTCTATTCGAACATTCACTGGACATGCAACGTCTGTGTTGTCACTAGATTTTCACCCTGACAAAGATGACCTTATTTGCTCTTGTGACAATGGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGGTTTCAACCTTGTATGGGAAGACTTCTTGCAGCTGCAGTAGATAATCTTGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAAACTTCAACTACAGGGCCATAACGACCCTGTCAAATCTGTGTGCTGGGATTTGTCTGGAAAATATATGGCTTCTCTTAGTGGTGATCTGGTTAGAGTCTGGACAGTTGGATCTGGTGGCAAAGGGGAATGGTTACATGAGTTGAATGCATCTGAGAACAAATTCAACACCTGTGCTTTCCACCCTTTCTATCCTGTGCTGGTCATTGGTTGCCGTGAGACTCTTCAGCTGTGGGACTTCAGTGAGAACAAGACATTGACTCTTAATGCGCATGACAAGGTTGTATCTTCCTTGGCAGTTTCAAATGTTACTGGGTTGCTGGCTTCAACTAGTCATGACAAGCATTTCAAGATATGGAAGTGA 2511 0.4281 MSHLNWEADKMLDVYIYDYLKKRQLHASARIFQAEGSVSMDPVVIDAPNGFLFEWWSVFWDIYIARTNQKHSEAAASYSKSQQSKAREMQRQLEQELLNANPNQQMHMQLLLQKYAQQQQSMGGTQLVSGSDSCPISNDPLMRQNQATLNAMATKTYEDRLKLPLQQDALDGATIKQKVADNVGQHLDPNHGSLLKAVAATTGRQATGQKLLSVPSILLGNNQQVQNRNQKLPVSTQDIKSDMNAMPRSQAVVPEGSSIGCHGSNQGGSNLTLKGWPLAGLDQLRSGFLQQNNLMQSLQSFNQLSLRQQLMLQAQQNLVSPSAGDFESRRLRMLLNCQNTGLGKDGQSNSVGDLMPNNGTPAQVGSPVLPRPDSVMFPKQQVQKSSQQVQQYSQHPLSSQQSQSLQRQEKISPGSMTVDGNVSSTLQGNDQASKSQIGRKRKPASSSGPANSSGTANTIGPSANSPSTPSTQTPGDMMIMSTLQQNVPSSKSSLMFGTDGLSSHTSAQNQLADMDQLAGDGSMGDNVESFLLLDDTDPTEKVGKGFSFKEIKHIMASSHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLQEHSEWITDVRFCPSLLRVATSSADKTVKVWDVDNPSYSIRTFTGHATSVLSLDFHPDKDDLICSCDNGEIRYWSIKNGSCTGVFKGGATQMRFQPCMGRLLAAAVDNLVSIFDVETLGCKLQLQGHNDPVKSVCWDLSGKYMASLSGDLVRVWTVGSGGKGEWLHELNASENKFNTCAFHPFYPVLVIGCRETLQLWDFSENKTLTLNAHDKVVSSLAVSNVTGLLASTSHDKHFKIWK* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2872 836 SUPERFAMILY WD40 repeat-like 559 836 IPR036322 GO:0005515
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 804 836 - -
Apr9g2872 836 ProSitePatterns Trp-Asp (WD) repeats signature. 615 629 IPR019775 -
Apr9g2872 836 Gene3D - 687 836 IPR015943 GO:0005515
Apr9g2872 836 MobiDBLite consensus disorder prediction 378 476 - -
Apr9g2872 836 Pfam WD domain, G-beta repeat 800 836 IPR001680 GO:0005515
Apr9g2872 836 Pfam WD domain, G-beta repeat 592 628 IPR001680 GO:0005515
Apr9g2872 836 Pfam WD domain, G-beta repeat 716 750 IPR001680 GO:0005515
Apr9g2872 836 Pfam WD domain, G-beta repeat 636 671 IPR001680 GO:0005515
Apr9g2872 836 Pfam WD domain, G-beta repeat 557 585 IPR001680 GO:0005515
Apr9g2872 836 MobiDBLite consensus disorder prediction 488 508 - -
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 596 631 - -
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 676 - -
Apr9g2872 836 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Apr9g2872 836 MobiDBLite consensus disorder prediction 341 364 - -
Apr9g2872 836 PANTHER LISH-SSDP-WD40 3 836 - -
Apr9g2872 836 Gene3D - 534 686 IPR015943 GO:0005515
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 804 836 IPR001680 GO:0005515
Apr9g2872 836 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 836 IPR044716 GO:0003714
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 680 IPR001680 GO:0005515
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 637 IPR001680 GO:0005515
Apr9g2872 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 585 IPR001680 GO:0005515
Apr9g2872 836 CDD WD40 550 836 - -
Apr9g2872 836 SMART WD40_4 674 710 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 632 671 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 713 751 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 757 795 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 547 586 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 589 628 IPR001680 GO:0005515
Apr9g2872 836 SMART WD40_4 797 836 IPR001680 GO:0005515
Apr9g2872 836 Pfam LisH 10 36 IPR006594 GO:0005515
Apr9g2872 836 MobiDBLite consensus disorder prediction 341 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2872 Apr-Chr9 35636090 35645881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2872 633 835 Miscellaneous Gene Families AT5G08390 23.333 8.75e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr9g2872 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2872 - - gmx:100801265 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2872 9 35636090 35645881 Apr9g2872 9 35636090 35645881 ECH