Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2870 ATGGCGCTCGCGCTGGTTATTCTTATCTTCCTCCTTCAACTCGGTCTCAGTGCCCGAGTCAACTCGGAACCCACTCAGGACAAGCAAGCCCTCCTTGCTTTTCTATCCAAAACCCCACACTCTAACCGTCTCCAATGGAACGCTTCCGATTCCGCTTGCAACTGGGTCGGTGTTCAATGCGACGCTTCGCGTTCCTTTGTCTTTTCGCTCCGTTTACCCGCTGTTGGCCTCGTGGGTCGGGTCCCACCCGACACAATTGGCCGTCTTTCTCAGCTTCGGGTACTTAGTCTCCGTTCCAATGGCCTCACCGGCGAGATCCCTTCCGATTTCTCCAACTTGACCTTCCTTCGCAGCCTTTACCTCCAGAAGAACGAGCTCTCCGGCGAGTTTCCTCCGAGTCTGACTCGTCTCTCTCGTTTGACTCGCTTGGATCTCTCCTCCAACAACTTCTCCGGTTCCATCCCTTTCTCCGTCAACAACTTGACACACCTCACCGGTCTCTTCCTGGAGAACAACACCTTCTCCGGGAAAATCCCAAGCATCACTGCCAAATTGAATAGCTTCAACGTTTCCAACAATCGCCTGAACGGTTCCATCCCGGAAACGCTGTCGGGGTTCCCCGAATCCTCATTCGCCGGAAATTTAGATCTCTGCGGACCCCCGTTGAAACCGTGCACTCCGTTTTTTCCGGCGCCGGCGCCGTCGCCGTCGTCCAATGCGCCGGCAAACCCTGCGAGAAAGAAGTCCAAGAAGCTCTCCACTGGCGCCATTATTGCAATCGTGGTTGGGTCTGTTCTGGCTGCGTTGCTGCTGTTACTGATTCTGCTTCTCTGCTTACGGAGGCGACAACGGCGGCAACCGGCGAAGCCCCCGAAGCCGGTGGCGGCGGCGCGTGCTGTGCCGGCGGAAGCGGGAACGTCGTCGTCGAAGGACGATATAACGGGGGGTTCGGCGGAGGCGGAGAGGAACAAGTTGGTGTTCTTCGAAGGGGGAATATACAGTTTCGATTTGGAGGATTTGTTAAGGGCTTCGGCGGAGGTGTTGGGGAAGGGTAGCGTTGGGACTTCGTATAAGGCGGTGTTGGAGGAAGGGACGACGGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTGACTAAGAAAGAGTTCGAGATGCAAATGGAGGTTCTGGGTAAGATTAAGCACGAGAATGTGGTTCCCCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACTTGTCTGCTGGTAGCTTGTCTGCTCTGCTTCACGGGAGCAGAGGGTCTGGGCGAACGCCACTAGACTGGGACAGCCGGATGAGAATAGCACTAGGAGCCGCAAGAGGGCTAGCATGCCTCCACGTGTCAGGCAAGGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCGAGGACCAGACCATGATGCCTCAGTTTCCGACTTTGGCCTCAATCCCTTGTTCGGAAACGGAGCCCCATCCAACCGGGTGGCGGGTTATCGGGCGCCCGAAGTCCTAGAAACCCGCAAAGTGAGCTTCAAATCCGACGTGTACAGCTTCGGTGTGTTGCTCTTGGAGCTACTAACGGGGAAAGCACCCAACCAAGCTTCTCTTGGGGAAGAGGGTATCGATCTTCCGAGGTGGGTGCAGTCGGTGGTACGCGAAGAGTGGACCGCGGAGGTGTTCGATGCTGAGCTGATGAGGCTGCATAACATCGAGGACGAGATGGTTCAGCTGTTGCAAATTGCGATGGCTTGTGTTTCGGTGGTCCCTGATCAGAGGCCTAACATGCCGGACGTGGTGCGTATGATTGAGGACGTGAACCGAGGCGAGACCGATGACGGGTTGCGACAGTCTTCCGATGATCCTTCGAAAGGATCCGAGGGTCATACGCCACCCCCCGAGTCAAGGACTCCACCTAGGTCCCGCACACCTTAA 1950 0.5585 MALALVILIFLLQLGLSARVNSEPTQDKQALLAFLSKTPHSNRLQWNASDSACNWVGVQCDASRSFVFSLRLPAVGLVGRVPPDTIGRLSQLRVLSLRSNGLTGEIPSDFSNLTFLRSLYLQKNELSGEFPPSLTRLSRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNTFSGKIPSITAKLNSFNVSNNRLNGSIPETLSGFPESSFAGNLDLCGPPLKPCTPFFPAPAPSPSSNAPANPARKKSKKLSTGAIIAIVVGSVLAALLLLLILLLCLRRRQRRQPAKPPKPVAAARAVPAEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYLSAGSLSALLHGSRGSGRTPLDWDSRMRIALGAARGLACLHVSGKVVHGNIKSSNILLRGPDHDASVSDFGLNPLFGNGAPSNRVAGYRAPEVLETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRLHNIEDEMVQLLQIAMACVSVVPDQRPNMPDVVRMIEDVNRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSRTP* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2870 649 SUPERFAMILY L domain-like 26 206 - -
Apr9g2870 649 MobiDBLite consensus disorder prediction 610 628 - -
Apr9g2870 649 PANTHER OS05G0588300 PROTEIN 11 629 - -
Apr9g2870 649 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Apr9g2870 649 Pfam Protein kinase domain 345 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2870 649 Gene3D Phosphorylase Kinase; domain 1 309 416 - -
Apr9g2870 649 Pfam Leucine rich repeat 80 126 IPR001611 GO:0005515
Apr9g2870 649 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Apr9g2870 649 SUPERFAMILY Protein kinase-like (PK-like) 346 610 IPR011009 -
Apr9g2870 649 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Apr9g2870 649 PANTHER OS05G0480400 PROTEIN 11 629 - -
Apr9g2870 649 CDD STKc_IRAK 348 609 - -
Apr9g2870 649 ProSiteProfiles Protein kinase domain profile. 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2870 649 MobiDBLite consensus disorder prediction 610 649 - -
Apr9g2870 649 MobiDBLite consensus disorder prediction 287 315 - -
Apr9g2870 649 Gene3D Transferase(Phosphotransferase) domain 1 417 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2870 Apr-Chr9 35611536 35615721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2870 1 629 Receptor kinase-like Gene Family AT5G58300 52.739 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr9g2870 Pkinase 3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2870 - - gmx:100806857 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2870 9 35611536 35615721 Apr9g2870 9 35611536 35615721 ECH