Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2868 ATGACGATGGACGACGATAGTTCCATATATGTTGGGGGTCTTCCCTACGACGCCACCGAAAATACCATTCGCACTGTCTTCAATTTGTATGGCGCCATTCTTGATGTCAAGATTATCAATGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACTAATCCTAGGTCAGCAATTGATGCCATCAACGACATGAATGGCAGAACCATTGATGGGCGTGTAGTTAAAGTTAATGGGGTGAGGAGTCGTGGGGGCAGGTCAAATTTTGGCAGAGAACGTTATTATTATCATAATGGTGATTGGGATCGTGGTAGAGATCGAGACAGAGATTATGATCATGATAATAACGATAAGGATGGATATAGAAATCGGAGCAGTGATTGGACTCGAGACCGTGATAGGTCTCGTGACCAGGACAGGGATAGAAGATTTGAACATATGCATGATTATGATCAAACAAGAGAACCTATGTTAGATAGTGATTGGGGTCGAGAGGATGATCGGGCTGAAACTGAACAAGAAAACAGCAGGGATCATGATGGAGATGTGGATAGAGACCACGACTTAGATTTGGACACAGACGGGAAGATGGATAGGGTCAGTGATCCTGATAGAAGTTTTGATGAGGATACAGAAGAACAGCCAAGGAGAAACAATGATTTGAATGTCACTAATCAGCATAGCATGGATCTTGCATCGGATTCAAATGGTACTGACAATGATCAGGTAGAAGATGAATTAGAGAGGTCAAATCAACAGATTGATCAACTAAAAGGGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGGCTTCAGGTCATGGAGTTACAAAAGCAATCTAAGAAACTGGAAGATGCGCTGATCAATGCGAAAAAACACACTTCATATCGTCAGATGCAGTTGACCAAGCTACATAAATGTTTTCTGCAAGTGAAAGATTACACAGAAAGACTTAAGACTAGTGAAAAAGAGCTTCAGGCTCTAATTGATGCAGCAATGTCAGAGATTGATGGTGATAGATTAAAGGATGGACAACTTGCAAATGGAAGTGTTGATGGTAGATAG 1077 0.4169 MTMDDDSSIYVGGLPYDATENTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNGDWDRGRDRDRDYDHDNNDKDGYRNRSSDWTRDRDRSRDQDRDRRFEHMHDYDQTREPMLDSDWGREDDRAETEQENSRDHDGDVDRDHDLDLDTDGKMDRVSDPDRSFDEDTEEQPRRNNDLNVTNQHSMDLASDSNGTDNDQVEDELERSNQQIDQLKGEVSQMEEGLEEKRLQVMELQKQSKKLEDALINAKKHTSYRQMQLTKLHKCFLQVKDYTERLKTSEKELQALIDAAMSEIDGDRLKDGQLANGSVDGR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2868 358 Gene3D - 2 98 IPR012677 -
Apr9g2868 358 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Apr9g2868 358 MobiDBLite consensus disorder prediction 220 240 - -
Apr9g2868 358 CDD RRM_SF 9 80 - -
Apr9g2868 358 Coils Coil 315 335 - -
Apr9g2868 358 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 354 - -
Apr9g2868 358 MobiDBLite consensus disorder prediction 107 219 - -
Apr9g2868 358 SMART rrm1_1 8 80 IPR000504 GO:0003723
Apr9g2868 358 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 354 - -
Apr9g2868 358 Coils Coil 242 297 - -
Apr9g2868 358 MobiDBLite consensus disorder prediction 107 250 - -
Apr9g2868 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Apr9g2868 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2868 7 79 Eukaryotic Initiation Factors Gene Family AT1G71770 30.137 2.41e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2868 - - gmx:100816804 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2868 9 35579840 35583649 Apr9g2868 9 35579840 35583649 ECH