Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2860 ATGAAAGGGGAAGTACAGCTTCAGCCTCCACAGGTTCTGCAAAACCCTAGTGATTCCGATCCTTTACTTCATCACCAGGAGGAGGACGAGTCGCCGGGAAGCTCTGGTGAGATTAAGGATGAGGAAGACGTTGAGGCTGGTTCACTCCCTTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCTGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAGCAGTTTGTCCATCGTTCATGCCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACCTGCAAAGCGCAATTTCATCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGAAAAGTAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTCTGATTGCTGCTATTGGTGGCTTTGCTTACATCATGGACAAAGATGGGAGCTTCAGGAACTCCTTCGATGATGGTTGGGATAGGATACTGTCAAAACATCCTATACCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTTATTGGATTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCCTCGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATCGCTTATGGTTTTCTTGCCGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTCGTGGCTGCTATTTTCCACCAAAGTTGGACCCAGAACATGAAAGTCGCTTGAAAATGCTCAAGCTTTTGTGA 924 0.4556 MKGEVQLQPPQVLQNPSDSDPLLHHQEEDESPGSSGEIKDEEDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKVKFRLFVARDVFLVFLAVQTLIAAIGGFAYIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHESRLKMLKLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2860 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 307 - -
Apr9g2860 307 MobiDBLite consensus disorder prediction 1 41 - -
Apr9g2860 307 CDD RING_CH-C4HC3_MARCH 52 103 - -
Apr9g2860 307 MobiDBLite consensus disorder prediction 21 41 - -
Apr9g2860 307 SMART ringv_2 51 103 IPR011016 GO:0008270
Apr9g2860 307 Pfam RING-variant domain 52 102 IPR011016 GO:0008270
Apr9g2860 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 116 IPR013083 -
Apr9g2860 307 ProSiteProfiles Zinc finger RING-CH-type profile. 44 109 IPR011016 GO:0008270
Apr9g2860 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 307 - -
Apr9g2860 307 SUPERFAMILY RING/U-box 49 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2860 Apr-Chr9 35498308 35502411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2860 1 307 C3H Transcription Factor Family AT1G11020 80.062 3.16e-172 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2860 - - gmx:100818950 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2860 9 35498308 35502411 Apr9g2860 9 35498308 35502411 ECH