Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2843 ATGAGTTTCTCTGACCACATTCCATCCTTTATGATGTCACCACCGTCATTTGCCACAAACACAGACGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAATGAAACATTGGAGCCACATTCACCACATGATCAACCCCCTTCTTTCAAGAGGGCAAGGACTTGTGATATCAACCACTCCAATGGCATGGCATGTCCTCCAAGGATCAATCAGCATCCACAGAACAACACAGCCAACAAAGGAACAAGCCACATTTTCTTCAAGACTCGCATTTGTGCAAAGTTCAGACTTGGTGCTTGTAGGAACGGTGAGAATTGCAACTTCGCACATGGGGTTGAAGACATGAGGCAGCCACCACCAAATTGGCAAGAACTCGTTGGATTGCGCAATGAAGAAAGGCCGTCGTCTGGGAATTGGGATGATGACCAGAAAATCATACACAGGATGAAGCTATGCAAGAAGTTTTACAATGGGGAGGATTGCCCCTATGGTGATAACTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCAGGGAGGTTCAGGGAGAGCACAGCTATAAGCATAGGAACTAATGGATCCCCAAAGTCCTATGGTGATGGCTGTGACAATTTAGATAGTAATAGGGCTGTCAACACAGGCTTAAATGTGTCTAGGGGGAATGTAAAGTCTACTTATTGGAAGACTAAACTGTGTATTAAGTGGGAGACAACAGGAAACTGCCCCTTTGGAGATGACTGTCACTTTGCTCATGGACAAGCAGAGTTACAAGTTCCTGCTGGACGCATTGAAGCAGAAACTGCAGGTGGGGCTGCAAGTTCAGTTAAAGCTACCGTTCCTTCGGTACCAAGAGCTACATCAGTTTCTGCTAATGATGCCCCTCCTAGCTACAGAGCAAGTGTGCCTCCAGCAAATGAAGAGGAGCAGGGTAAGAAGCATTTACTGAAGTGGAAAGGACCCAAGAAAATCAATCGAATTTATGGTGATTGGCTTGACGATTTACCTCTTGCTCACAACTTGCCAAGTAGAGTGGAGATCTGA 1050 0.4562 MSFSDHIPSFMMSPPSFATNTDAIEVRLQFPMNNETLEPHSPHDQPPSFKRARTCDINHSNGMACPPRINQHPQNNTANKGTSHIFFKTRICAKFRLGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERPSSGNWDDDQKIIHRMKLCKKFYNGEDCPYGDNCSFLHEDPAKFRDDSGRFRESTAISIGTNGSPKSYGDGCDNLDSNRAVNTGLNVSRGNVKSTYWKTKLCIKWETTGNCPFGDDCHFAHGQAELQVPAGRIEAETAGGAASSVKATVPSVPRATSVSANDAPPSYRASVPPANEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLAHNLPSRVEI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2843 349 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
Apr9g2843 349 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Apr9g2843 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 256 IPR000571 GO:0046872
Apr9g2843 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Apr9g2843 349 SUPERFAMILY CCCH zinc finger 228 260 IPR036855 GO:0046872
Apr9g2843 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 338 IPR045877 GO:0003729
Apr9g2843 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 338 - -
Apr9g2843 349 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Apr9g2843 349 MobiDBLite consensus disorder prediction 283 297 - -
Apr9g2843 349 Pfam CCCH-type zinc finger 150 171 IPR041367 -
Apr9g2843 349 Gene3D - 223 261 - -
Apr9g2843 349 Gene3D - 79 117 - -
Apr9g2843 349 Gene3D - 146 175 - -
Apr9g2843 349 SUPERFAMILY CCCH zinc finger 146 173 IPR036855 GO:0046872
Apr9g2843 349 MobiDBLite consensus disorder prediction 283 314 - -
Apr9g2843 349 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Apr9g2843 349 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Apr9g2843 349 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Apr9g2843 349 SMART c3hfinal6 146 173 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2843 Apr-Chr9 35336186 35338254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2843 231 260 C3H Transcription Factor Family AT1G68200 63.333 1.60e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g2843 zf-CCCH 4.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2843 - - aprc:113846184 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2843 9 35336186 35338254 Apr9g2843 9 35336186 35338254 ECH