Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2839 ATGGATGAAGATTTGGTGAAGCGCAACACCGATTGCGTTTATTTCCTGGCCTCTCCCCTCACTTGCAAGAAGGGTGCTGAGTGTGAGTATCGGCATAATGAGATTGCGAGGCTCAACCCTAGGGATTGCTGGTACTGGTTATCTGGACATTGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCATTGGATGGACATACTGGAGTGCCATCTGAACCTTCTCCAACTTCATTACCTGCAAACAAGACAATTGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAGATGCTCGTTTTTGCATGGGCCTGGTGATAGCTTTATCACTGTAAAACCTTTGAAGAATGACAATGGAAGCACTGATGCACTCAAATTAGAGAATAAAACTTCATCGGGAAATACAACAGGTGTAGCATCAACACCCATTAAAACACAATTTGACAGATCTTTAACTGCTCCAAAGGATTTGTCTGATTTTGAATTTCAGCCTATGGAAGATCGTCAGCTGCCATTATCCAAAAATGTTAAGGGGCATGGTGATTCCCTTGAGATATCTGCTTTAGAATCCAAAGAAGCTACAGCGACTAGGTCGGACTCTGTGTTTCCAGATGATGGCTTTGTTCATAATATATCTCATTTAGGTACTGAGCAGAGTTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAGGAACGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAATTGGAGAATTTGGGTTATGAGGAAGATTCTGAATATTTTCAAGTGCTTGATAGGGATGACCAAGAACTTAATGAGCAATACTTGGGGTATGAATTTAAAGATTCAGTTGAGTATGATACTATATGCCCAGAAGCTGATATTCTGTATGAACAAGAAACATATGATGATTACAGATGCTTTGATAGAGATCTTAGTCATGCTAATGGCAGAACAGTTCACGCTTATCCCAGAGAGATAATCTTAGATTCTATATTGTCCAGGAAAAGGATCCGAATGTCGGCTGAAATGGCCGCTTATGACAAGAAGTTAGATCTACGTGACCATCTGAGGAGACGTAGGGAAATTAATGGTCCTCCTGTTACAGGTTTCTTAAGAAGACACGAATCATCTTCTTTGATGGCTCGAAACCAGGAAAGGCATCAAAGGCATGGCATTGATCAGCGGCTAAGTAGAAGATTGACATCACAATTGGGTTTTAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCACAGATTACTCGGGAATTCCCAGCAACATAGGCCAAGGAAGCATTTTAAAGAAAAACTAGCTAAAAGGCAGTTCATTTCATCTAAAATATCCAGGAAACCCGTTTTAAAGCAAAGGAGATTTATTCACGAGTCCATTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAAAGGAGGGCTGAAGAAAATATACATTGTAAAAGCATGTCATCTGATTTTCAGGATCCTAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATCAAGTGAGAGATGGCAATACCTGCCACAAATGA 1602 0.4051 MDEDLVKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGHCLNPTCAFRHPPLDGHTGVPSEPSPTSLPANKTIVPCYFFFNGFCNKGDRCSFLHGPGDSFITVKPLKNDNGSTDALKLENKTSSGNTTGVASTPIKTQFDRSLTAPKDLSDFEFQPMEDRQLPLSKNVKGHGDSLEISALESKEATATRSDSVFPDDGFVHNISHLGTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDELENLGYEEDSEYFQVLDRDDQELNEQYLGYEFKDSVEYDTICPEADILYEQETYDDYRCFDRDLSHANGRTVHAYPREIILDSILSRKRIRMSAEMAAYDKKLDLRDHLRRRREINGPPVTGFLRRHESSSLMARNQERHQRHGIDQRLSRRLTSQLGFSAIDSIGEVETLSIANKHRLLGNSQQHRPRKHFKEKLAKRQFISSKISRKPVLKQRRFIHESITFSGPKTLAEIKEEKRRAEENIHCKSMSSDFQDPKPLSEILKDKRTMDQVRDGNTCHK* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2839 533 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Apr9g2839 533 Pfam Zinc-finger containing family 7 63 IPR041686 -
Apr9g2839 533 ProSiteProfiles Zinc finger C3H1-type profile. 7 35 IPR000571 GO:0046872
Apr9g2839 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 107 IPR000571 GO:0046872
Apr9g2839 533 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Apr9g2839 533 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Apr9g2839 533 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Apr9g2839 533 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Apr9g2839 533 Gene3D - 3 63 - -
Apr9g2839 533 Gene3D - 76 150 - -
Apr9g2839 533 Coils Coil 483 503 - -
Apr9g2839 533 MobiDBLite consensus disorder prediction 128 152 - -
Apr9g2839 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 523 - -
Apr9g2839 533 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
Apr9g2839 533 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2839 Apr-Chr9 35313931 35317448 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g2839 zf-CCCH_3 2.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2839 - - aprc:113847503 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2839 9 35313931 35317448 Apr9g2839 9 35313931 35317448 ECH