Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2833 ATGCCATGGTCTCATGCTTCTCCCGAGTTCACTCACAACCCAACTCATTCTTCTCACTCACGTTACGTCCCTCCACAATACAGAAATAACAACATTCCAACTTCTTTTCCTTTCTCCCATGATTCTACCCGTTGCGCCTTCAACCGTTCTGCCTCCAGGACACGTGGCCGTGGCGGTTCAACTGCCAGGAGGTTTTCCCGCCCGGAACAGCCGCGTCATAATGATATTTCTTACTGGAACGGCCGCTGCCCCTTCGATGAAGCTGAGGTGGCCGGCCAAGTCCAAAGCGGCGATGCTATCAACTTTGACGCTTACGAATCGGTGCCGGTGGAGGCGAGTGGGAAGAACGTGCCCCCGCCGGTGAATGCCTTCGATGAAACCGACTTGGACGAAGGTTTGAAGAGGAACATCGAGAGATGCAAGTACGTTAAACCCACGCCAGTTCAGCGTCACGCGATTCCCATTGCCATTGCGGGTCGTGACTTGATGGCGTGCGCGCAGACAGGGTCGGGTAAAACGGCGGCGTTTTGCTTTCCCATTATATCGGGGATTCTGAAGGGTCGTTCCGGTTCTGGGTTTTCGGCAATGCCTCGTGGTGGCTTAGTTGCATACCCTACTGCGCTTATTTTGTCTCCTACGAGGGAGTTGTCGTGCCAGATACGAGATGAAGCGAACAAGTTTGCATATCAAACAGGAGTGAAAGTTGTGGTGGCTTATGGTGGGGCTTCCATTACTCAACAGCTACGGCATTTGGAGAAGGGTGTTGATATATTGGTTGCAACTCCTGGGCGATTGGTTGATATTATTGAGAGGGAAAGGGTTTCATTGAAGAGGATAAAATATCTTGCTTTGGATGAGGCAGATCGTATGTTGGACATGGGGTTTGAGCATCAAATACGCAAGATTGTGGAGCAAATGCACATGCCTCCACCGGGTGTTAGACAAACTATGCTTTTTAGTGCTACCTTTCCTAATGATATACAGAAGCTTGCATCTGATTTTCTATCCAACTACATATTCCTGGCTGTTGGAAGGGTTGGTTCGAGCACTGAGTTGATCGAACAAAGGATTGAACTTGTGCAAGATACGGAAAAGAGAAACCATCTTGTTGATATTCTGCGTAGTCAAAAGGCGCATGGAGCCAATGGGAAGCATTCTCTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAAACTGGTTGTCGAGATGTGGGTTTCCAGCCACTACAATACATGGTGATAAAGTTCAAATGGAGAGGGAACGGGCTTTAAGGTCTTTCAAATCTGGTTCGACTCCAATTTTGGTGGCCACTGATGTTGCTTCCCGAGGATTGGATATCCCACATGTGGCTCATGTTATCAACTTTGACTTGCCTAGAGACATTGATGACTATGTACATAGGATTGGAAGAACAGGCCGTGCAGGTAAATCTGGTTTAGCCACTGCGTTCTTCAGCAGCAAGAACACTCCTCTTGCAAAGGCACTTGTTGGACTCTTGCAGGAAGCAAACCAGGAAGTTCCATCTTGGTTCAGCCAATACACTGAGAGTTCATTTTTTAGTGGTCGTAGCCATGGGCCTAGGCGATATAATAGTGGCAATTATGGTGGTCGTGACTTCAGAAATGTGACTGAACCTGAGGTGGAGAGTTACAACTACAGTACTTGTGACAATGCGGATTCTGCTGTGGATTCTTACCTTGATGGTGTCAAAAACTCTCACACTGATTCATCTCTTGACAACATCACTAATACAGCTTCTGAGTGCAGCTATCAACATACTAATGATAATTCTGATTTCTATGGAGGTGGAAAGGTTGAAGATGGACCATGTGGTTATACATCTATTGTTGCTACAGGATGGGAATAG 1881 0.4694 MPWSHASPEFTHNPTHSSHSRYVPPQYRNNNIPTSFPFSHDSTRCAFNRSASRTRGRGGSTARRFSRPEQPRHNDISYWNGRCPFDEAEVAGQVQSGDAINFDAYESVPVEASGKNVPPPVNAFDETDLDEGLKRNIERCKYVKPTPVQRHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGILKGRSGSGFSAMPRGGLVAYPTALILSPTRELSCQIRDEANKFAYQTGVKVVVAYGGASITQQLRHLEKGVDILVATPGRLVDIIERERVSLKRIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGVRQTMLFSATFPNDIQKLASDFLSNYIFLAVGRVGSSTELIEQRIELVQDTEKRNHLVDILRSQKAHGANGKHSLTLVFVETKKGADALENWLSRCGFPATTIHGDKVQMERERALRSFKSGSTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSSKNTPLAKALVGLLQEANQEVPSWFSQYTESSFFSGRSHGPRRYNSGNYGGRDFRNVTEPEVESYNYSTCDNADSAVDSYLDGVKNSHTDSSLDNITNTASECSYQHTNDNSDFYGGGKVEDGPCGYTSIVATGWE* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2833 626 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 39 558 - -
Apr9g2833 626 CDD SF2_C_DEAD 353 489 - -
Apr9g2833 626 Gene3D - 344 523 IPR027417 -
Apr9g2833 626 SMART helicmild6 399 480 IPR001650 -
Apr9g2833 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 341 IPR014001 -
Apr9g2833 626 MobiDBLite consensus disorder prediction 1 28 - -
Apr9g2833 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 495 IPR027417 -
Apr9g2833 626 CDD DEADc_DDX3_DDX4 124 347 IPR044763 GO:0003724|GO:0005524
Apr9g2833 626 Pfam DEAD/DEAH box helicase 146 330 IPR011545 GO:0003676|GO:0005524
Apr9g2833 626 Pfam Helicase conserved C-terminal domain 365 480 IPR001650 -
Apr9g2833 626 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Apr9g2833 626 SMART ultradead3 141 356 IPR014001 -
Apr9g2833 626 Gene3D - 85 343 IPR027417 -
Apr9g2833 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 519 IPR001650 -
Apr9g2833 626 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 558 - -
Apr9g2833 626 MobiDBLite consensus disorder prediction 48 78 - -
Apr9g2833 626 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2833 Apr-Chr9 35272213 35275244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2833 120 500 Eukaryotic Initiation Factors Gene Family AT3G19760 31.675 1.79e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2833 K11594 - gmx:100791226 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2833 9 35272213 35275244 Apr9g2833 9 35272213 35275244 ECH