Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2818 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTATCTGAAATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTTGGCACATTTGAAACAGCAGAAGAAGCAGCTAGAGCTTATGATCAAGCTGCAATTTTGATGAGTGGTCGAAATGCCAAAACCAATTTCCCAATAACCCAAACACCTGAAGGTGACCCAAAGAGCACTAACAGTGAGGACACTCCCTCCACCTCAAAGGATCTGGAAGAAATCCTACATGCAAAGCTTCGAAAATGTGGCAAGGTACCCTCGCCTTCCATGACATGTTTGAGGCTTGACACAGAGAACTCTCATATTGGAGTGTGGCAAAAGCGTGCTGGGAGGCGTTCTGATTCGAACTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTGGCAATGAGGGTAGTAGTGAAGAGAGTGGTAATAGTAGTAATCTTCTACCTTCTTCTGAACAACAATCTCCATCAGCAGTGAATGATCATCAAGAACTGGTGAGATCAGAGATTGATGAAGAGGAGAGAATTGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGGAACTGTCCTAGCCCATCATTTAACAACATTCAAGAAAGGGATCATCATGACAGCTTCTTCCTTTAA 663 0.457 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTNSEDTPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSGNEGSSEESGNSSNLLPSSEQQSPSAVNDHQELVRSEIDEEERIALQMIEELLNDRNCPSPSFNNIQERDHHDSFFL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2818 220 MobiDBLite consensus disorder prediction 60 81 - -
Apr9g2818 220 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 MobiDBLite consensus disorder prediction 60 84 - -
Apr9g2818 220 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 MobiDBLite consensus disorder prediction 141 173 - -
Apr9g2818 220 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Apr9g2818 220 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Apr9g2818 220 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 208 - -
Apr9g2818 220 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Apr9g2818 220 MobiDBLite consensus disorder prediction 141 174 - -
Apr9g2818 220 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2818 Apr-Chr9 35160045 35161181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2818 1 197 AP2-EREBP Transcription Factor Family AT1G15360 61.275 9.91e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g2818 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2818 - - gmx:100814893 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2818 9 35160045 35161181 Apr2g2627 2 30116400 30117198 ECH
Apr9g2818 9 35160045 35161181 Apr9g0173 9 2245927 2246914 ECH
Apr9g2818 9 35160045 35161181 Apr9g2818 9 35160045 35161181 ECH