Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2808 ATGTCGAGTTGCAGCATCGATGTTGCGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATCGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCACCCGGGCACTGCAATCCAGAGTATAGGATTGACACTGGCTCCACCTCAAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAGAGGGTTGTGAACCGGCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCCCATATTCATTTCGGCCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGAGAATGTCTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTACTGAACAAATGA 561 0.4795 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKHLMSRAALLNK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2808 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Apr9g2808 186 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
Apr9g2808 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Apr9g2808 186 Gene3D High mobility group box domain 98 176 IPR036910 -
Apr9g2808 186 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2808 Apr-Chr9 35038934 35043135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2808 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 78.395 2.23e-92 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr9g2808 YABBY 2.8e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2808 K25796 - gmx:100804731 383.645