Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2796 ATGGAGCTTCAACTTGGCCTCGCCCTCCCAACCATTCCCTCCAAACTCCTCGACCTCAATTCTCGTACCTACGACCCTTTTAACCACAAAAAACGTACCTTTTCTCAGCTCTCGGAGCACGCACCTGAAACTACTCACACCCCCACCCATGTTATGCTTCCTACTCTGTCTCTTCTCCCTTTAACTCCTTCCCGCTCAAACCACGATCATCAACACCCCATCCACACCAAGGACGATGAGGAGGATGTAGAAGCTTTAGTGGGTTGGCCGCCAGTAAATTTTTGGAGGAAGAAACTTCGTTTTGATAACTATGGGGAAGAGGTTGCAGGGAATGATCACACGGTCTGGATTGATCATCATCAAAATGGACATGGACATGGACGTGGTTCTGTTGCCCTCAGAGGATCCCATACTCTGTACGTGAAAGTGAAGATGGAGGGTGTAGGGATTGCGCGAAAGATTGATCTTAGCATGCACCAATCGTTTCAAACGCTCAAGGAAACTTTGATGGACATGTTTGGCAAATGTCATCAGCCATCAGGCGGCTATGAACTGGCTTATCAGGATAAAGAGGGTGATTGGCTTCTTGCAGAAGATGTACCATGGAGAAGTTTCGTTCAGTGTGCACGACGGCTCAAATTGCTGAAGAGGATCCGATAA 660 0.4788 MELQLGLALPTIPSKLLDLNSRTYDPFNHKKRTFSQLSEHAPETTHTPTHVMLPTLSLLPLTPSRSNHDHQHPIHTKDDEEDVEALVGWPPVNFWRKKLRFDNYGEEVAGNDHTVWIDHHQNGHGHGRGSVALRGSHTLYVKVKMEGVGIARKIDLSMHQSFQTLKETLMDMFGKCHQPSGGYELAYQDKEGDWLLAEDVPWRSFVQCARRLKLLKRIR* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2796 219 SUPERFAMILY CAD & PB1 domains 129 214 - -
Apr9g2796 219 MobiDBLite consensus disorder prediction 59 79 - -
Apr9g2796 219 Gene3D - 134 219 - -
Apr9g2796 219 Pfam AUX/IAA family 182 216 IPR033389 -
Apr9g2796 219 Pfam AUX/IAA family 31 175 IPR033389 -
Apr9g2796 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 216 - -
Apr9g2796 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 216 IPR003311 GO:0005634|GO:0006355
Apr9g2796 219 ProSiteProfiles PB1 domain profile. 138 219 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2796 Apr-Chr9 34904702 34906090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2796 121 216 B3 DNA Binding Superfamily AT1G19850 35.000 1.83e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr9g2796 AUX_IAA 4.8e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2796 K14484 - gmx:100808466 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2796 9 34904702 34906090 Apr9g2796 9 34904702 34906090 ECH