Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2773 ATGTCCACAAACCACTCAATTAATGGAGACTCCGAGTCCCTCCTTCGGCAACCTTTGCTGTCTTCGCAGAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTATTGGCGCCAATGTCTGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAATGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGGCTCAGATATTGCAGTATGTTGTTATGAAGTGGCTCTTGTGCTTTCTAGTTGGAGTGATTGTTGCTGTCATTGGGTTTTGCAACAATCTCGCAGTTGAGAATCTCGCTGGCATCAAGTTTGTCGTCACTTCCAACATGATGTTCGAAAATAAGTTTCTGTTGGCCTTTCTAGTATTTTTTGCTTCAAATTTGGGTCTCACGCTTTTTGCCTCTATAATCACGGCTTTGATAGCTCCTACTGCTACTGGTTCAGGTATACCAGAGGTGAAGGCTTACCTAAATGGCGTGGATGCACCAGGAATATTTACTCTACGAACTCTGTTTGTTAAGATTATTGGAAGCATTACAGGAGTATCATCATCTCTCAATATTGGGAAGGCAGGGCCTATGGTACATACAGGTGCATGTGTGGCAGCATTGTTGGGTCAGGGTGGGTCAAAGAGATACGGGTTAACATGGAAATGGTTACATCATTTTAAGAACGACCGAGATCGACGGGATCTCATAGTATGTGGATCAGCAGCTGGAATGGCTGCTGCCTTCCGTGCCCCTGTTGGTGGTGTGTTGTTTGTTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCCCTTCTCTGGAGAGCTTTCTTCACAACAGCAGTAGTTGCAATTTTGCTTCGTGCCATGATTGATGTATGCTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGAGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATCTTCCTCCTGTTTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATATAATTTGATGTTGAGCAAAGTTCTTCGCATATACAATTTTATCTACGAGAAGGGCACTGTTTTCAAAATTTTGCTTACTTGTTTAATTTCCATGTTTACATCCTGTCTTCTTTTTGGATTGCCATGGATTACATCATGCCGACCTTGCCCATCTGACCCAACTGAGCCTTGTCCTACAATAGGTCGATCTGGTATCTACAAGAAATTCAGCTGCCCTCCTCATCACTACAATGATCTTGCTAGTCTTATTTTTAACACAAATGATGATGCTATCCGAAATCTATTTAGCAAGAATACTGATGATGAGTTTGAGCACACATCAATGCTCATCTTTTTCATCACATGCTTTTTTCTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCCGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGACGCTTTGTTGGAATGTTGGTTGGCAAACAGTCCAATCTTAACCATGGCCTTTATGCTGTACTTGGCGCTGCCTCCTTTCTTGGTGGATCCATGAGGACAACAGTTTCTCTCTGTGTAATTATGCTAGAACTTACCAATAACTTGTTATTACTCCCCCTAATCATGATGGTGCTGTTGATATCTAAGACTGTAGCAGATACTTTCAATGCAAATATATATGACCTTATAGTGAAAGCCAAAGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTCAGCGATGTAGTCACTGGCCCACTTCAGATGTTTAATGGCATTGAGAAGGTTCGTAACATAGTGTTTGTTCTCAAAACTACAGGACATAATGGGTTTCCTGTTATTGATGAGCCTCCAATTTCAGAAGCTCCAGTGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACGTTGTTGAAGAAGAAAGCTTTCTTGTCCTCACCTATGGCATTAAGTGATGATGTCTGGCATAAGTTTTCATCAGATGATTTTGCAAAAAAGGGTTCAAGCAATGGTCTAAAGATAGAGGATATACAGTTAACCGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCGCCTTATACTGTTGTGGAAACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTGAGACACCTGCTTGTGGTACCTAAGATCTCCGGTAGATCACCTGTGGTGGGTATACTGACACGGCACGATTTCATGCCAGAACATATATTGGGTGTGCATCCTTATCTAGTAATAAACAGGTGGAAAAGATTAATACTTTAG 2295 0.4179 MSTNHSINGDSESLLRQPLLSSQRSIVNSTSQVAIIGANVCPIESLDYEIFENEFFKQDWRSRGKAQILQYVVMKWLLCFLVGVIVAVIGFCNNLAVENLAGIKFVVTSNMMFENKFLLAFLVFFASNLGLTLFASIITALIAPTATGSGIPEVKAYLNGVDAPGIFTLRTLFVKIIGSITGVSSSLNIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLHHFKNDRDRRDLIVCGSAAGMAAAFRAPVGGVLFVLEEMASWWRTALLWRAFFTTAVVAILLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGILGSLYNLMLSKVLRIYNFIYEKGTVFKILLTCLISMFTSCLLFGLPWITSCRPCPSDPTEPCPTIGRSGIYKKFSCPPHHYNDLASLIFNTNDDAIRNLFSKNTDDEFEHTSMLIFFITCFFLSIFSYGVVAPAGLFVPVIVTGASYGRFVGMLVGKQSNLNHGLYAVLGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLISKTVADTFNANIYDLIVKAKGLPYLETHAEPYMRQLTVSDVVTGPLQMFNGIEKVRNIVFVLKTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLKKKAFLSSPMALSDDVWHKFSSDDFAKKGSSNGLKIEDIQLTEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKISGRSPVVGILTRHDFMPEHILGVHPYLVINRWKRLIL* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2773 764 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Apr9g2773 764 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 ProSiteProfiles CBS domain profile. 692 753 IPR000644 -
Apr9g2773 764 PANTHER CHLORIDE CHANNEL PROTEIN 12 762 - -
Apr9g2773 764 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr9g2773 764 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr9g2773 764 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr9g2773 764 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr9g2773 764 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr9g2773 764 Gene3D Clc chloride channel 67 565 - -
Apr9g2773 764 SUPERFAMILY CBS-domain pair 568 743 IPR046342 -
Apr9g2773 764 Gene3D - 566 744 IPR046342 -
Apr9g2773 764 Pfam CBS domain 696 742 IPR000644 -
Apr9g2773 764 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr9g2773 764 CDD CBS_pair_voltage-gated_CLC_euk_bac 568 745 - -
Apr9g2773 764 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 12 762 - -
Apr9g2773 764 SMART cbs_1 696 747 IPR000644 -
Apr9g2773 764 SMART cbs_1 585 638 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2773 Apr-Chr9 34624021 34630004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2773 8 762 Ion Channels AT5G33280 74.305 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2773 K05016 - gmx:100817901 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2773 9 34624021 34630004 Apr9g2773 9 34624021 34630004 ECH