Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2742 ATGGGAAGTAACGGTACTGAAAAGATCCCCAGCAATAACAATGCTGAAAGTTCCGAAACTACTATCGAGATAAAGATTAAAACATTGGATTCACAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTTTGAAAGAACAAATTGCTTCTGTAACCGGAGTGTTATCAGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCATGTTGAAGATGGTCACACTCTGCATCTAGTTGCAAGGCAACCTGATCTACCACCACCTGGAAGTGTGCTCCATCATTCAGTGACTGAAACAAATTCAAGCACAAGCCATGGTCACAGTAGTCAAATAGCCCCTGGTGTATTTATTGAAACTTTCAATTTGCCCATTCAGGGGGATGCAGTTCCTCCCGAAATCGATAGGATTGTTTCTGCCGTTCTAGGATCTATTCGACTTCCAACTTTTGCAAGTGGCAGTGAAGGGATTGATGTCAGGGATCATGATTCCCAAGGCTTTGGAAGAACTTTGGGTTCTGGTGGAATATTGGATTTATCTCATCCTCAACCTGAACAAGCTGGTTTGCGGTTTTCTTCTGATAGATCGCGTAATACCTTTGGACTTCCAGCAACAATATCACTAGGGTCCTTGCAGCCTTCTGTCATTCCTGATTCTTTGACAACGTTGTCCCAGTACCTAAGTCATATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATAATGTCCAAGCAGCTGAGGCACGTAGGAATGAAGAAACGGGATCTGTTTCTTCACGTTCGGGTTCAACTCCAGAAGGGCTCTCATCACCCTCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGATCGTTGAACAAGCTGGGGAATACCTACTTCAACTCTCAAGGCAATTGGAGAATCAAGCAGATGTAACTGATCCCTTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCGTTTTTACTTGAGCTGGGTCGCACAACCATGACATTGCGTTTGGGTCAAACCCCGTCTGAAGCTGTAGTTAACGGTGGGCCTGCAGTTTTTATATCTCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTATTCAACCTGGGCCAAGCTTTGGTGCTGTACCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTGGTGGACTTGGTTCAAGTTTTCTCCCTAGGCGTATTGATATACAAATACGGCGAGGTACCTCGACAACCCCATCCAGTACCAATCAAGAAGAACGCAATGATACGCAATCTGCTTCAATACAAAGAAATCCAGGTGAAAGTTCTGTTAATCAAACAACTTATAGGCGTCCAGATGCATCTGTTTCTGGGGAGCCAGGAGTAAGGTTAGTGCCAATTAGAACCATGGTTGCAGCTGTACCAGGACCCTTAGGTCGTCCGCCTTTGGAATCATCTGGTAATTCCATAGGGCTTTACTATCCAGTACTTGGGAGATTTCAACATGTATCTACTGGGCATGCAAATAGTGAACATGTATCTCAACAATCCAGTCAGCATCATGCTGCTCTACTTTCAACTCCTGAATCCACACTGCAAAGGCAAAGCACAGAAGATTCTGCGAGGAATGGATCCTTATCAACTCCAAGCACGAGACAAGAGCCATCAAATTCTCGAGTTGTAAATATCAATATTCTGGCTGCTAGTGGGCCTCAAAACAACCAAGAATCTGAGAGACAAATACCAAGCAGTGTACTTCAGTTTTTAAGGACACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGGACAAATGCAGGTTCTACCTCAGATCACGCTGCAACATCAAGGGGTGCTGCCCAAGTCCCTGAAGCACAGCCTAATGTTAGTGACGAAGGAATTTTTTTGTCTAACATACTCCGTGAGATCATGCCAGTCATAAGTCAACAATTAGGGTCTGAGGGAAATCCTTCGGAAGATCATATGGCTCAAGATTCTGCAACCCAGGTTGAAACTGATGCTGGGACATCACTCAGACGGAGTGGTTCTGAACCAAGTCCCCCAAATCCAAAACGTCAAAAGTGTGTTCCATTTTCCTTACTCCCAATTTCCATTGGGCAAAGGGGTGGATACTTACAACAGGTGCCCTGGCACTCACTCAGTGACAGCTCACAACTCCAGCATGGGACTCTATGGGAGAGTGAATGTGTACTTAGGATATATGTTGCTCTCTTTGTTGGGTCGTCCTATGGTGTCTCTGATCCCATGATCGTGTGTCTGCTATTCATTAGCAGTTATACAATACTAGTCTGTCTCAGACGGAGTAATATAGAGGATAATGTTCGGTCGAGGAGGATTGTGAACATAGGAAACAGAATTCAGGGTGGATCTCATGATGTCAATTTGGTAGTATACGCTTGTGTAATTATCTACATCAAGCGTTATGTCACTCTCTCCTTCTGTAGACAAAATTTTAAGACTGCTGTCCGAATGTGA 2556 0.4444 MGSNGTEKIPSNNNAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSVLHHSVTETNSSTSHGHSSQIAPGVFIETFNLPIQGDAVPPEIDRIVSAVLGSIRLPTFASGSEGIDVRDHDSQGFGRTLGSGGILDLSHPQPEQAGLRFSSDRSRNTFGLPATISLGSLQPSVIPDSLTTLSQYLSHISHEFDAIVREGGDNVQAAEARRNEETGSVSSRSGSTPEGLSSPSSLAEVLLSTRRMIVEQAGEYLLQLSRQLENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPIQPGPSFGAVPVGAAQSNSSLGGGLGSSFLPRRIDIQIRRGTSTTPSSTNQEERNDTQSASIQRNPGESSVNQTTYRRPDASVSGEPGVRLVPIRTMVAAVPGPLGRPPLESSGNSIGLYYPVLGRFQHVSTGHANSEHVSQQSSQHHAALLSTPESTLQRQSTEDSARNGSLSTPSTRQEPSNSRVVNINILAASGPQNNQESERQIPSSVLQFLRTLFPGGEIHVEDSSVQGTNAGSTSDHAATSRGAAQVPEAQPNVSDEGIFLSNILREIMPVISQQLGSEGNPSEDHMAQDSATQVETDAGTSLRRSGSEPSPPNPKRQKCVPFSLLPISIGQRGGYLQQVPWHSLSDSSQLQHGTLWESECVLRIYVALFVGSSYGVSDPMIVCLLFISSYTILVCLRRSNIEDNVRSRRIVNIGNRIQGGSHDVNLVVYACVIIYIKRYVTLSFCRQNFKTAVRM* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2742 851 MobiDBLite consensus disorder prediction 617 649 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 262 286 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 671 714 - -
Apr9g2742 851 SMART ubq_7 22 93 IPR000626 GO:0005515
Apr9g2742 851 MobiDBLite consensus disorder prediction 618 636 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 428 477 - -
Apr9g2742 851 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 714 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 259 286 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 105 120 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 96 120 - -
Apr9g2742 851 SUPERFAMILY Ubiquitin-like 17 101 IPR029071 -
Apr9g2742 851 PRINTS Ubiquitin signature 32 52 IPR019956 -
Apr9g2742 851 PRINTS Ubiquitin signature 53 73 IPR019956 -
Apr9g2742 851 PRINTS Ubiquitin signature 74 95 IPR019956 -
Apr9g2742 851 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Apr9g2742 851 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Apr9g2742 851 MobiDBLite consensus disorder prediction 671 708 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 522 574 - -
Apr9g2742 851 Gene3D - 14 116 - -
Apr9g2742 851 MobiDBLite consensus disorder prediction 428 469 - -
Apr9g2742 851 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2742 Apr-Chr9 34380956 34390790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2742 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.68e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2742 K23390 - gmx:100783070 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2742 9 34380956 34390790 Apr9g2742 9 34380956 34390790 ECH