Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2740 ATGTGTGTGCAAGAAGATGAGCAAGTTGATCAAGTTATTGAGAACAACCTTGATAACAGAAGGATGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGAAAACCGAGAAAAGGACGCTTTTTTTGGAGCTCCCACTAACAGGATCTTCGCTGCAAATTCATTTCCACTGGAAAGCATATGTGAGGATGCAGAGACTGTGGACAAAAGACAGAACCTGATGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAAACCGCCCTTCCATGGAGGATACCCACATATGCATTGGAGACTTAGCAAAGAAATTTGGTAATACTGTGCTCAGCGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGTGATCATCTGCCGCGGGTGATTGTTGAGGATGTTGACTTCCCTTTGGAACTTGAAAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAATTTGCAAGAACATGTTCTATCGAGTCTTCCCTGTCTTCTGGTACAACCGCACTGACAGCAATTATATTTGGAAGGACTTTACTTGTAGCCAATGCAGGAGACTGCCGTGCTGTATTGTCACGTGGTGGAGGGGCCATAGAAATGTCCACAGATCATAGGCCATTGTGCAATAAAGAAAGAATGAGAATTTTGTCCCTGGGTGGATTCATTGATGATGATTACCTGAATGGGCAGTTAGGCGTCACTCGTGCTCTAGGTGACTGGCATCTTGAAGGAATGAAGGAGATGAACGGAAAGGATGGACCATTGAGTGCTGAACCTGAACTCAAATTGATGACGTTGACCAAAGAAGATGAGTTTTTGATAATTGGCAGTGATGGTATATGGGATGTTTTTCGCAGCCAAAATGCTGTAGACTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAACCAGTGTTGCAAGGAGATAACAGGAGAAGCAATAAAGAGAGGAGCAACAGACAACTTGACAGTAGTTATGATATGTTTTCACTCAGATCCACCACCTTCAGTAGTTGTAGAAAGGCCTAAATTTAGAAGAAGTATATCTGCTGAGGGACTTCAAAATATTAAATGCTTTCTAGAAGGATAG 1146 0.4311 MCVQEDEQVDQVIENNLDNRRMSWPLHCDLLHAHMENREKDAFFGAPTNRIFAANSFPLESICEDAETVDKRQNLMNFVPTLRSGEWSDIGNRPSMEDTHICIGDLAKKFGNTVLSEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDVDFPLELEKVVTRSFLETDAEFARTCSIESSLSSGTTALTAIIFGRTLLVANAGDCRAVLSRGGGAIEMSTDHRPLCNKERMRILSLGGFIDDDYLNGQLGVTRALGDWHLEGMKEMNGKDGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVNQCCKEITGEAIKRGATDNLTVVMICFHSDPPPSVVVERPKFRRSISAEGLQNIKCFLEG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2740 381 SMART PP2C_4 73 346 IPR001932 -
Apr9g2740 381 Pfam Protein phosphatase 2C 91 340 IPR001932 -
Apr9g2740 381 Gene3D - 64 351 IPR036457 -
Apr9g2740 381 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Apr9g2740 381 SUPERFAMILY PP2C-like 76 349 IPR036457 -
Apr9g2740 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 368 - -
Apr9g2740 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Apr9g2740 381 CDD PP2Cc 83 348 IPR001932 -
Apr9g2740 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2740 Apr-Chr9 34366268 34370008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2740 64 381 PP2C-type Phosphatase Gene Family AT2G25620 58.696 1.46e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Apr9g2740 PP2C 6.6e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2740 K14803 - gmx:100782648 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2740 9 34366268 34370008 Apr9g2740 9 34366268 34370008 ECH
Apr9g2740 9 34366268 34370008 Apr1g2548 1 35021279 35024174 PCT