Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2738 ATGGGTTCGGCTTCAAGTCGACTTGGTTCTCGCCCTTCTTCTCCGAGGGTCAACCGCTTCAGTTTATCATCTCTTCTATGTGGCACCTCCACTTCTCGTTCCATTTGCCAGGTTGATTCAGCAAGAGAATTTGATGGTGAAATTCAGAAAGACATTGAGGAATCATCTTTATCACGTACAGAAGCTAGAGTTAGCTTTGGTCCCCGTGCTGAAACTTCAACCTCCCCTGATATTAGAAATGAGTTATACGGTAATACTACTGGTGAAGGTTCTTCCTTAAATGTTTCAACAGGTAGTCAGAGAGAGCTCTTGTCTGAACGTAAGGAGCTAGTCCCTCTTTTTAAGGTAAGTGTTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAATGCAGCTAGTACTTCATTTGTACAACAGCAGTCTTCAGATCCGGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATGATGTTGATGATCCAGTGGTTAGTGGCACCTCTCAATTCTCTCTTGAGACAACGCTTCCAAGAAGTTCAACCCCTCAAGTGCATGGGAATTCAAGTTCTGGTGAAATTTCTGTTGAGAATCAAACTAGTTCATTCATATCTATCCAGAATTCGTCTTCCAATCCCGTTGCTCAACTTTCAAACTTAGCAGCAACTTCTCAAGTTCCAGAAGATGAACTCCGTCGCGAGACAATACCTTCTGGTTTAGGTATTCTTGTGTCCAATCGTGAAAGAGGGCAGGGAAATGACAGTGTGCTTCAAGTTGATGTGGTCACTATATCTTCCAACATTTTGTCTGGGAGCAATGCTGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGGTTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCCACTGGAGGTGCTGATGATCCAGGATCGATGGATCGATGGATGGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCTGGATATATGGGCAGTAGAATTCACAGATGGAATGAACGAATGCAGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCTTCATGTCCATTAGGACTCCATGCAGATGATATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAGTCTAGCACCAGAGCAAGTATTTCAAGAATAGTCATGCTAGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCTCTATCCATGGTCTCGCTCCCTGCACCTGAATCAATTGTGGACTCCTTCCCTCTGAAATCTCACAAAAAGGTTGATACAGCTGATGGAGGCAATGATACTGAACAATGTTACATATGTCTGGCAGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAATCATGAATACCACATGTCGTGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACAGAGTCTTCTGCCCACTCAGAAGTGCCGTCTCATTGA 1587 0.4386 MGSASSRLGSRPSSPRVNRFSLSSLLCGTSTSRSICQVDSAREFDGEIQKDIEESSLSRTEARVSFGPRAETSTSPDIRNELYGNTTGEGSSLNVSTGSQRELLSERKELVPLFKVSVGHSGHESYSDSSNAASTSFVQQQSSDPVSVNVSANKDAVNDVDDPVVSGTSQFSLETTLPRSSTPQVHGNSSSGEISVENQTSSFISIQNSSSNPVAQLSNLAATSQVPEDELRRETIPSGLGILVSNRERGQGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSMDRWMVDFGGDLSNDGVGGASGYMGSRIHRWNERMQHSRSEIWERLRGGFDEIGRWNSSCPLGLHADDMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDTADGGNDTEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAHSEVPSH* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2738 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 513 IPR013083 -
Apr9g2738 528 MobiDBLite consensus disorder prediction 121 194 - -
Apr9g2738 528 ProSiteProfiles Zinc finger RING-type profile. 467 509 IPR001841 -
Apr9g2738 528 MobiDBLite consensus disorder prediction 122 154 - -
Apr9g2738 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 526 - -
Apr9g2738 528 Pfam Ring finger domain 466 509 IPR001841 -
Apr9g2738 528 MobiDBLite consensus disorder prediction 163 194 - -
Apr9g2738 528 SMART ring_2 467 508 IPR001841 -
Apr9g2738 528 CDD mRING-H2-C3H2C2D_ZSWM2 466 509 - -
Apr9g2738 528 MobiDBLite consensus disorder prediction 59 101 - -
Apr9g2738 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 526 - -
Apr9g2738 528 SUPERFAMILY RING/U-box 461 512 - -
Apr9g2738 528 MobiDBLite consensus disorder prediction 47 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2738 Apr-Chr9 34351976 34356983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2738 357 522 C3H Transcription Factor Family AT5G45290 47.253 7.00e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2738 - - gmx:100783604 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2738 9 34351976 34356983 Apr9g2738 9 34351976 34356983 ECH