Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2733 ATGGCTTTCCACGACCATCTCCACCACGAAATAGCGTTCCAGCGTTTCACGGAGCAGCAACAACTAACCGAGAATAGAGACATGCAACAGAGGTTGCCACCGACATGGCTCAACAACGTTAACGCTGCGCATCAGCGTCAGCAGAATTTTCTCGACAGCACCGAGAAAAGCGTGGATCGGAACCTAAACGAAAGTAATTGTGAATCCGAGGATTTAAGGGGATACAAAGCTGACATTTTGGGACACCCTCTCTACGATCAGCTTCTATCAGCTCACGTTTCGTGCCTGAGAATTGCCACACCCGTCGACCAGCTTCCTAGGATCGATGCTCAGCTTCAGCAGTCACAGCGCGTTGTTGAAAAATACTCTGCACTTGCAAATGCTGTTGTTGATGAGAAGGAGCTTGATCAGTTCATGACACATTATCTTCTATTGCTCTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTCGAACAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGATCAGGCAGAAAGCAATGGGAACTTATACGAAGGAAGCATTGATGGCACTGAAACTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCTTTGATGGAACGAGTCAGGCACGAGTTGAAGCATGAGCTAAAACAGGGATACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGGAAGAGACGAGCGGGGAAGCTCCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAGTGGCCTTACCCCACTGAGGAAGACAAGGCTCGATTGGTACAAGAAACAGGGTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCTTCATCTTCCACCAACTCCAAAAGCAAGCGCAAGAGCAGTACAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1038 0.4711 MAFHDHLHHEIAFQRFTEQQQLTENRDMQQRLPPTWLNNVNAAHQRQQNFLDSTEKSVDRNLNESNCESEDLRGYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANAVVDEKELDQFMTHYLLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNGNLYEGSIDGTETLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTNSKSKRKSSTGETSNQSFM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2733 345 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Apr9g2733 345 Gene3D - 263 341 - -
Apr9g2733 345 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 338 - -
Apr9g2733 345 Pfam KNOX1 domain 75 116 IPR005540 GO:0003677|GO:0005634
Apr9g2733 345 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Apr9g2733 345 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 338 - -
Apr9g2733 345 SUPERFAMILY Homeodomain-like 259 324 IPR009057 -
Apr9g2733 345 SMART KNOX2_2 124 180 IPR005541 GO:0003677|GO:0005634
Apr9g2733 345 MobiDBLite consensus disorder prediction 314 345 - -
Apr9g2733 345 Pfam ELK domain 237 258 IPR005539 GO:0003677
Apr9g2733 345 Pfam KNOX2 domain 129 179 IPR005541 GO:0003677|GO:0005634
Apr9g2733 345 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Apr9g2733 345 CDD homeodomain 260 321 IPR001356 GO:0003677
Apr9g2733 345 SMART HOX_1 259 324 IPR001356 GO:0003677
Apr9g2733 345 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Apr9g2733 345 SMART ELK_2 237 258 IPR005539 GO:0003677
Apr9g2733 345 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2733 Apr-Chr9 34317383 34324771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2733 75 342 Homeobox Transcription Factor Family AT5G11060 81.618 2.49e-165 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g2733 KNOX2 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2733 - - gmx:100803673 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2733 9 34317383 34324771 Apr9g2733 9 34317383 34324771 ECH
Apr9g2733 9 34317383 34324771 Apr1g2553 1 35052191 35056531 PCT