Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2728 ATGCCGGACGGAGAATCTTTCACCGTGGGTCTCTCTTTGAGTCTTTCCGAAGTCAATAATCACGATGACTCAGTCAAGAAAGATCCCAATAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTGGGGACAGGATGTGGAAAGACCCACATTGCCGTGCTTCTCATGCATGAGATGGGTCATTTGATTCGTAAACCCCAGAAGAATGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCCACTGATTTTAAGGTTGGGACTTACTGCGGGAGTTCCAAGCGCTTGAAACGTCATCAAGATTGGGAGCAGGAGATTAGACAATATGAGGTGCTTGTTATGACCCCACAAATATTGCTTCACAACTTATCCCATTGTTTCATCACGATGGAGATGATTGCACTTCTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAATACAAAGATAATTCTACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCCATTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGTGAAAAGCATCAATAGTCTTGAACGTTTGCTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAATTGCAAGCTTTTGTGACCACTCCTATGATTAACATATATCATTATGGTTCAACTGCAAATGCAGAAACTAGTTTGTACTCAAAAATTGAGGAGATTAAATGCCAGTGTGTAGCAACCATTGGTAAGAGTATAGAAGATCACCAGAAACGAATGAACACGAAGAAACTTCTGAACCGGATGCATGATAATGTGCTTTTCTGTCTGGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTCTGAGTGGTGATCATTCTGAAAGGCATGAATTAGTGGAGGCAGAAGGAAACTCAAGTGATGACTCTCTGTGCGATAAATATCTTGTTCAAGCAGCTGAACTCTTTGCTTCACAATGTGTGATAGGTGACTGTGTATCTGATCTGTCTTCTGTGGAAGTATTAAAAGAGCCCTGTTTTTCAACCAAGCTTTTACGCCTCGTTGGGATACTGTCCAACTTTAGGTTGCAAAAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCTAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGACAATGGAAGAGTGATTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCGGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTCGCAATAAGAAGGAACTAGCCATAATCAATGGATTTGAGAAAGATGAATACAGAATGAATATGCAAATTAGTGTTCGAACATCCAATGAGACATACATCGTCCCTGAGGAAAGGATATTCAGAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGATCCCAAGCCAATTTTTTCTTACTTCAATGATTTAGGGGGAATTGTCTGCCACATAACATTGCCTTCCAATGCACCTATACACCAAATTGTTGGTGCACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTAGCTTGAAAGCAATAGAAGAACTGTATAAATTAAGTGCTTTAAGTGATTGTCTCTTGCCAAAGCCAAATGATGTAGAGCCAGAGGAGCAGGTTTCAGGATCTTGTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAATTCCTTCTGCCATTAGACAGTCATGGATAAACAAGGATACAATCGTCAGTCTCAATTCTTACTACATAAAATTTTGTCCCTGTCCAAAGGATAGGGTCTATAAAGAGTTTGGTCTATTTGTCATGACTTTTCTTCCAATGGAGGCTGAGAACCTGGAACTTGATCTCCATCTTGCTCGTGGTAGATCTGTAATGACAAGTTTTGTTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATCAGAATTTGTTTCTGAGTTTGTAGACTTAGGTAAGGGTGCTGAATCTCACACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTTGAATTGCAAGAAAATGAAAATGTCATGAAAGTTGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTTAGGCATCCAGCAGATCCTACGGATAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAAAAGTGTAAGAGATGTCAAGAATAGTTTAGTTTATGCCCCTCATAAGAAGGTCTTTTATTTTGTCACGGATATTGTCAATAAAAAGAATGGATTTAGTCCTTATAGGGATTCAGGCACTTCAAGGTCAAGCTATGTGGACCATTTCATCGAAAACTTTTCCATTCACCTCAAATGCCCAGAACAACCACTTCTGCATGCAAAACGACTATTCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATACAGAACCACATGAGCAGGAGGAATACTTAATTTATTTGCCTCCTGAGGTATGTGAACTGAAAATAATAGGATTTTCGAAGGATATCGGTAGTTCCATATCTTTGCTGCCCTCAATTATGCATCGTCTGGGAAACTTTTTGGTGGCTATTGAACTCAAGGACGTGCTATCCTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTTGAGGCTCTCACCACTGAAAAGTGTCAGGAACGATTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAGTTTGCTGTTGCGCGTCATTTTTTTCTCATGCATGATAGCTTTCATGAAGGAGACCTTACAAAAAGGCGATCAAATGTTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAAGCGTAATTTGCAGGTCTATATATGTGATCAGGCATTTGATCCTGTCCAGTTCTATGCATTAGGCCGCTGTTGCCCAAGAGTTTGTAGCAAGGAAACTGAAGACAGTATACACTTCTGTTTAAGTTCTGTTAAGGAGCAAAGAAGAGCAACTGAAACCCGATGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGTTTTAAAGCTGCAATTTCCTTTCTTAAATGGATTGGCATACAAGTTGATTTTGAAGCATCACAGGTGGTTAATATTTGCACAGGAAGTGCTGGCTATTTCCCCCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAGGTAAGTTAGGATATGACTTTGTTCATAAGGGTCTGCTGCTCCAGGCTTTTGTACATCCCTCTTACAATAAGCATGGGGGAGGCTGTTATCAACGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATACTCAGCTTATCCCAAACTGAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCTTGTGTAGCACTAGACCGTAGTTTTGACAAATTTCTTTTATGTGATTCAAGTAGCCTGTCTGACGCAATAAAAAAGTATGGGGACTACATTAGAAGACCTGTATCAGGTAGTGGCACTAACGAAGGGCCAACATGTCCTAAGGCCCTGGGTGATTTAGTAGAATCTTGTGTTGGTGCTGTTCTTCTTGATTCAGGGTTCAATTTGAACAAGGTTTGGACGGTTATGACTTCATTCTTGGACCCAATCATAAAGTTCTCATCAAACTTGCAGCTCAGTCCTATTAGGGATTTGCAAGAACTTCGCCAATCTCATGGTTTGAAGTTGCAGTTTCTGGAATCAAAGCTGACTAAAACATTTTCAGTTGAAGCCAAAGTGACTGGAAATGGTGTATGTGAAAGAGCTCAGGGAACTGGCCAAAATAAAAAGGAGGCTTCTAGAATTGCTTCACAGCGACTTTTTTCAAACTTAAAGGCTCAAGGCTGGAAACTGAAGTCAAAAACTTTGAAAGAAGTTCTGGAATCAACTTCTAAAACTGAACCAAAACTTATTGGCTATGATGAAACACCCATTAATGTAACAGATACCAGTTCTGTCAGGCAGATAATGGTCAATGCAGACATGTGCAACAAGTTTAGCCCAGAAGTCGATATATGCTCCCCATGTGTGAAACCTTTTGGCCTACAGCTTCAATCTTCTGCTGAGGGAAAGCTTAGTCTAACAATTGAAAATCATGATGGTGGAAGTGACTCATCAAGGACAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCTTTTTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGAGGGACCAGATCACCTGAAAATATTCACTTGCAAGGTGACCTTGGAGATGGAAGAGAACCCAGATATGATTTTTGAGTTCATTGGAGAACCAAAGTCAAAGAAGAAAGATGCATCAGAGAGTGCTGCTGAGGGTGCGTTTTGGTACCTGCAACAGGAAGGTTACATGCTGAGTGGTAATTGA 4848 0.4006 MPDGESFTVGLSLSLSEVNNHDDSVKKDPNKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNVCVFLAPTVALVHQQAKVIEDSTDFKVGTYCGSSKRLKRHQDWEQEIRQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKYKDNSTKVPRIFGMTASPIVGKGASSEANLVKSINSLERLLDAKVYSVEDKELQAFVTTPMINIYHYGSTANAETSLYSKIEEIKCQCVATIGKSIEDHQKRMNTKKLLNRMHDNVLFCLGNLGIWGALQASRILLSGDHSERHELVEAEGNSSDDSLCDKYLVQAAELFASQCVIGDCVSDLSSVEVLKEPCFSTKLLRLVGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWKSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSRNKKELAIINGFEKDEYRMNMQISVRTSNETYIVPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPIFSYFNDLGGIVCHITLPSNAPIHQIVGAPQLSMEASKRDASLKAIEELYKLSALSDCLLPKPNDVEPEEQVSGSCDEDECEDAISRGELHEMLIPSAIRQSWINKDTIVSLNSYYIKFCPCPKDRVYKEFGLFVMTFLPMEAENLELDLHLARGRSVMTSFVPFGVVEFDKDEIKMAENFQEMFLKIILDRSEFVSEFVDLGKGAESHTSTSTFYLLLPVELQENENVMKVDWKTVKRCLCSPIFRHPADPTDKKVFPLDIHLQLANGYKSVRDVKNSLVYAPHKKVFYFVTDIVNKKNGFSPYRDSGTSRSSYVDHFIENFSIHLKCPEQPLLHAKRLFNLHNLLHNRKHEDTEPHEQEEYLIYLPPEVCELKIIGFSKDIGSSISLLPSIMHRLGNFLVAIELKDVLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSFHEGDLTKRRSNVVNNSNLFKLAIKRNLQVYICDQAFDPVQFYALGRCCPRVCSKETEDSIHFCLSSVKEQRRATETRCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAISFLKWIGIQVDFEASQVVNICTGSAGYFPLSSDVDIPSLEGKLGYDFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVALDRSFDKFLLCDSSSLSDAIKKYGDYIRRPVSGSGTNEGPTCPKALGDLVESCVGAVLLDSGFNLNKVWTVMTSFLDPIIKFSSNLQLSPIRDLQELRQSHGLKLQFLESKLTKTFSVEAKVTGNGVCERAQGTGQNKKEASRIASQRLFSNLKAQGWKLKSKTLKEVLESTSKTEPKLIGYDETPINVTDTSSVRQIMVNADMCNKFSPEVDICSPCVKPFGLQLQSSAEGKLSLTIENHDGGSDSSRTGTARSRLYELCAAFCWKPPTFECCKEEGPDHLKIFTCKVTLEMEENPDMIFEFIGEPKSKKKDASESAAEGAFWYLQQEGYMLSGN* 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2728 1615 SUPERFAMILY dsRNA-binding domain-like 1531 1610 - -
Apr9g2728 1615 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 563 653 IPR005034 GO:0016891
Apr9g2728 1615 ProSiteProfiles PAZ domain profile. 858 960 IPR003100 GO:0005515
Apr9g2728 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 512 IPR027417 -
Apr9g2728 1615 SMART helicmild6 409 499 IPR001650 -
Apr9g2728 1615 ProSitePatterns Ribonuclease III family signature. 1232 1240 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 SUPERFAMILY RNase III domain-like 1009 1170 IPR036389 GO:0004525|GO:0006396
Apr9g2728 1615 ProSiteProfiles Ribonuclease III family domain profile. 1197 1341 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 218 IPR014001 -
Apr9g2728 1615 Pfam PAZ domain 858 981 IPR003100 GO:0005515
Apr9g2728 1615 SMART riboneu5 1009 1176 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 SMART riboneu5 1212 1364 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 Pfam Dicer dimerisation domain 563 647 - -
Apr9g2728 1615 ProSiteProfiles Ribonuclease III family domain profile. 1011 1156 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 Gene3D - 1364 1442 - -
Apr9g2728 1615 Pfam Helicase conserved C-terminal domain 391 497 IPR001650 -
Apr9g2728 1615 SMART ultradead3 29 236 IPR014001 -
Apr9g2728 1615 Gene3D Dicer dimerisation domain 559 654 IPR038248 -
Apr9g2728 1615 SUPERFAMILY PAZ domain 852 958 IPR036085 GO:0005515
Apr9g2728 1615 PANTHER DICER-LIKE PROTEIN 4 29 1609 - -
Apr9g2728 1615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 542 IPR001650 -
Apr9g2728 1615 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1368 1434 IPR014720 -
Apr9g2728 1615 SMART PAZ_2_a_3 836 986 IPR003100 GO:0005515
Apr9g2728 1615 SMART DRBM_3 1532 1606 IPR014720 -
Apr9g2728 1615 SMART DRBM_3 1369 1433 IPR014720 -
Apr9g2728 1615 CDD RIBOc 1213 1363 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 Gene3D paz domain 852 958 - -
Apr9g2728 1615 Gene3D Ribonuclease III domain 1195 1363 IPR036389 GO:0004525|GO:0006396
Apr9g2728 1615 CDD RIBOc 1010 1166 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 SUPERFAMILY RNase III domain-like 1196 1360 IPR036389 GO:0004525|GO:0006396
Apr9g2728 1615 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1532 1606 - -
Apr9g2728 1615 Gene3D Ribonuclease III domain 1005 1167 IPR036389 GO:0004525|GO:0006396
Apr9g2728 1615 Hamap Ribonuclease 3 [rnc]. 1200 1429 IPR011907 GO:0003723|GO:0004525|GO:0006364
Apr9g2728 1615 Pfam DEAD/DEAH box helicase 35 199 IPR011545 GO:0003676|GO:0005524
Apr9g2728 1615 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1531 1607 IPR014720 -
Apr9g2728 1615 SUPERFAMILY dsRNA-binding domain-like 1323 1432 - -
Apr9g2728 1615 Gene3D - 372 534 IPR027417 -
Apr9g2728 1615 Pfam Ribonuclease III domain 1232 1341 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 Pfam Ribonuclease III domain 1025 1156 IPR000999 GO:0004525|GO:0006396
Apr9g2728 1615 Gene3D - 1538 1607 - -
Apr9g2728 1615 CDD DEXHc_dicer 31 232 - -
Apr9g2728 1615 PANTHER DICER-RELATED 29 1609 - -
Apr9g2728 1615 Gene3D - 33 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2728 Apr-Chr9 34239705 34264289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2728 397 496 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 2.08e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2728 K11592 - gmx:100818702 2715.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2728 9 34239705 34264289 Apr9g2728 9 34239705 34264289 ECH