Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr9g2728 | ATGCCGGACGGAGAATCTTTCACCGTGGGTCTCTCTTTGAGTCTTTCCGAAGTCAATAATCACGATGACTCAGTCAAGAAAGATCCCAATAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTGGGGACAGGATGTGGAAAGACCCACATTGCCGTGCTTCTCATGCATGAGATGGGTCATTTGATTCGTAAACCCCAGAAGAATGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCCACTGATTTTAAGGTTGGGACTTACTGCGGGAGTTCCAAGCGCTTGAAACGTCATCAAGATTGGGAGCAGGAGATTAGACAATATGAGGTGCTTGTTATGACCCCACAAATATTGCTTCACAACTTATCCCATTGTTTCATCACGATGGAGATGATTGCACTTCTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAATACAAAGATAATTCTACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCCATTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGTGAAAAGCATCAATAGTCTTGAACGTTTGCTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAATTGCAAGCTTTTGTGACCACTCCTATGATTAACATATATCATTATGGTTCAACTGCAAATGCAGAAACTAGTTTGTACTCAAAAATTGAGGAGATTAAATGCCAGTGTGTAGCAACCATTGGTAAGAGTATAGAAGATCACCAGAAACGAATGAACACGAAGAAACTTCTGAACCGGATGCATGATAATGTGCTTTTCTGTCTGGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTCTGAGTGGTGATCATTCTGAAAGGCATGAATTAGTGGAGGCAGAAGGAAACTCAAGTGATGACTCTCTGTGCGATAAATATCTTGTTCAAGCAGCTGAACTCTTTGCTTCACAATGTGTGATAGGTGACTGTGTATCTGATCTGTCTTCTGTGGAAGTATTAAAAGAGCCCTGTTTTTCAACCAAGCTTTTACGCCTCGTTGGGATACTGTCCAACTTTAGGTTGCAAAAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCTAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGACAATGGAAGAGTGATTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCGGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTCGCAATAAGAAGGAACTAGCCATAATCAATGGATTTGAGAAAGATGAATACAGAATGAATATGCAAATTAGTGTTCGAACATCCAATGAGACATACATCGTCCCTGAGGAAAGGATATTCAGAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGATCCCAAGCCAATTTTTTCTTACTTCAATGATTTAGGGGGAATTGTCTGCCACATAACATTGCCTTCCAATGCACCTATACACCAAATTGTTGGTGCACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTAGCTTGAAAGCAATAGAAGAACTGTATAAATTAAGTGCTTTAAGTGATTGTCTCTTGCCAAAGCCAAATGATGTAGAGCCAGAGGAGCAGGTTTCAGGATCTTGTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAATTCCTTCTGCCATTAGACAGTCATGGATAAACAAGGATACAATCGTCAGTCTCAATTCTTACTACATAAAATTTTGTCCCTGTCCAAAGGATAGGGTCTATAAAGAGTTTGGTCTATTTGTCATGACTTTTCTTCCAATGGAGGCTGAGAACCTGGAACTTGATCTCCATCTTGCTCGTGGTAGATCTGTAATGACAAGTTTTGTTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATCAGAATTTGTTTCTGAGTTTGTAGACTTAGGTAAGGGTGCTGAATCTCACACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTTGAATTGCAAGAAAATGAAAATGTCATGAAAGTTGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTTAGGCATCCAGCAGATCCTACGGATAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAAAAGTGTAAGAGATGTCAAGAATAGTTTAGTTTATGCCCCTCATAAGAAGGTCTTTTATTTTGTCACGGATATTGTCAATAAAAAGAATGGATTTAGTCCTTATAGGGATTCAGGCACTTCAAGGTCAAGCTATGTGGACCATTTCATCGAAAACTTTTCCATTCACCTCAAATGCCCAGAACAACCACTTCTGCATGCAAAACGACTATTCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATACAGAACCACATGAGCAGGAGGAATACTTAATTTATTTGCCTCCTGAGGTATGTGAACTGAAAATAATAGGATTTTCGAAGGATATCGGTAGTTCCATATCTTTGCTGCCCTCAATTATGCATCGTCTGGGAAACTTTTTGGTGGCTATTGAACTCAAGGACGTGCTATCCTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTTGAGGCTCTCACCACTGAAAAGTGTCAGGAACGATTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAGTTTGCTGTTGCGCGTCATTTTTTTCTCATGCATGATAGCTTTCATGAAGGAGACCTTACAAAAAGGCGATCAAATGTTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAAGCGTAATTTGCAGGTCTATATATGTGATCAGGCATTTGATCCTGTCCAGTTCTATGCATTAGGCCGCTGTTGCCCAAGAGTTTGTAGCAAGGAAACTGAAGACAGTATACACTTCTGTTTAAGTTCTGTTAAGGAGCAAAGAAGAGCAACTGAAACCCGATGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGTTTTAAAGCTGCAATTTCCTTTCTTAAATGGATTGGCATACAAGTTGATTTTGAAGCATCACAGGTGGTTAATATTTGCACAGGAAGTGCTGGCTATTTCCCCCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAGGTAAGTTAGGATATGACTTTGTTCATAAGGGTCTGCTGCTCCAGGCTTTTGTACATCCCTCTTACAATAAGCATGGGGGAGGCTGTTATCAACGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATACTCAGCTTATCCCAAACTGAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCTTGTGTAGCACTAGACCGTAGTTTTGACAAATTTCTTTTATGTGATTCAAGTAGCCTGTCTGACGCAATAAAAAAGTATGGGGACTACATTAGAAGACCTGTATCAGGTAGTGGCACTAACGAAGGGCCAACATGTCCTAAGGCCCTGGGTGATTTAGTAGAATCTTGTGTTGGTGCTGTTCTTCTTGATTCAGGGTTCAATTTGAACAAGGTTTGGACGGTTATGACTTCATTCTTGGACCCAATCATAAAGTTCTCATCAAACTTGCAGCTCAGTCCTATTAGGGATTTGCAAGAACTTCGCCAATCTCATGGTTTGAAGTTGCAGTTTCTGGAATCAAAGCTGACTAAAACATTTTCAGTTGAAGCCAAAGTGACTGGAAATGGTGTATGTGAAAGAGCTCAGGGAACTGGCCAAAATAAAAAGGAGGCTTCTAGAATTGCTTCACAGCGACTTTTTTCAAACTTAAAGGCTCAAGGCTGGAAACTGAAGTCAAAAACTTTGAAAGAAGTTCTGGAATCAACTTCTAAAACTGAACCAAAACTTATTGGCTATGATGAAACACCCATTAATGTAACAGATACCAGTTCTGTCAGGCAGATAATGGTCAATGCAGACATGTGCAACAAGTTTAGCCCAGAAGTCGATATATGCTCCCCATGTGTGAAACCTTTTGGCCTACAGCTTCAATCTTCTGCTGAGGGAAAGCTTAGTCTAACAATTGAAAATCATGATGGTGGAAGTGACTCATCAAGGACAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCTTTTTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGAGGGACCAGATCACCTGAAAATATTCACTTGCAAGGTGACCTTGGAGATGGAAGAGAACCCAGATATGATTTTTGAGTTCATTGGAGAACCAAAGTCAAAGAAGAAAGATGCATCAGAGAGTGCTGCTGAGGGTGCGTTTTGGTACCTGCAACAGGAAGGTTACATGCTGAGTGGTAATTGA | 4848 | 0.4006 | MPDGESFTVGLSLSLSEVNNHDDSVKKDPNKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNVCVFLAPTVALVHQQAKVIEDSTDFKVGTYCGSSKRLKRHQDWEQEIRQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKYKDNSTKVPRIFGMTASPIVGKGASSEANLVKSINSLERLLDAKVYSVEDKELQAFVTTPMINIYHYGSTANAETSLYSKIEEIKCQCVATIGKSIEDHQKRMNTKKLLNRMHDNVLFCLGNLGIWGALQASRILLSGDHSERHELVEAEGNSSDDSLCDKYLVQAAELFASQCVIGDCVSDLSSVEVLKEPCFSTKLLRLVGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWKSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSRNKKELAIINGFEKDEYRMNMQISVRTSNETYIVPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPIFSYFNDLGGIVCHITLPSNAPIHQIVGAPQLSMEASKRDASLKAIEELYKLSALSDCLLPKPNDVEPEEQVSGSCDEDECEDAISRGELHEMLIPSAIRQSWINKDTIVSLNSYYIKFCPCPKDRVYKEFGLFVMTFLPMEAENLELDLHLARGRSVMTSFVPFGVVEFDKDEIKMAENFQEMFLKIILDRSEFVSEFVDLGKGAESHTSTSTFYLLLPVELQENENVMKVDWKTVKRCLCSPIFRHPADPTDKKVFPLDIHLQLANGYKSVRDVKNSLVYAPHKKVFYFVTDIVNKKNGFSPYRDSGTSRSSYVDHFIENFSIHLKCPEQPLLHAKRLFNLHNLLHNRKHEDTEPHEQEEYLIYLPPEVCELKIIGFSKDIGSSISLLPSIMHRLGNFLVAIELKDVLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSFHEGDLTKRRSNVVNNSNLFKLAIKRNLQVYICDQAFDPVQFYALGRCCPRVCSKETEDSIHFCLSSVKEQRRATETRCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAISFLKWIGIQVDFEASQVVNICTGSAGYFPLSSDVDIPSLEGKLGYDFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVALDRSFDKFLLCDSSSLSDAIKKYGDYIRRPVSGSGTNEGPTCPKALGDLVESCVGAVLLDSGFNLNKVWTVMTSFLDPIIKFSSNLQLSPIRDLQELRQSHGLKLQFLESKLTKTFSVEAKVTGNGVCERAQGTGQNKKEASRIASQRLFSNLKAQGWKLKSKTLKEVLESTSKTEPKLIGYDETPINVTDTSSVRQIMVNADMCNKFSPEVDICSPCVKPFGLQLQSSAEGKLSLTIENHDGGSDSSRTGTARSRLYELCAAFCWKPPTFECCKEEGPDHLKIFTCKVTLEMEENPDMIFEFIGEPKSKKKDASESAAEGAFWYLQQEGYMLSGN* | 1616 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr9g2728 | 1615 | SUPERFAMILY | dsRNA-binding domain-like | 1531 | 1610 | - | - | |
Apr9g2728 | 1615 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 563 | 653 | IPR005034 | GO:0016891 | |
Apr9g2728 | 1615 | ProSiteProfiles | PAZ domain profile. | 858 | 960 | IPR003100 | GO:0005515 | |
Apr9g2728 | 1615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 81 | 512 | IPR027417 | - | |
Apr9g2728 | 1615 | SMART | helicmild6 | 409 | 499 | IPR001650 | - | |
Apr9g2728 | 1615 | ProSitePatterns | Ribonuclease III family signature. | 1232 | 1240 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | SUPERFAMILY | RNase III domain-like | 1009 | 1170 | IPR036389 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | ProSiteProfiles | Ribonuclease III family domain profile. | 1197 | 1341 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 40 | 218 | IPR014001 | - | |
Apr9g2728 | 1615 | Pfam | PAZ domain | 858 | 981 | IPR003100 | GO:0005515 | |
Apr9g2728 | 1615 | SMART | riboneu5 | 1009 | 1176 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | SMART | riboneu5 | 1212 | 1364 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Pfam | Dicer dimerisation domain | 563 | 647 | - | - | |
Apr9g2728 | 1615 | ProSiteProfiles | Ribonuclease III family domain profile. | 1011 | 1156 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Gene3D | - | 1364 | 1442 | - | - | |
Apr9g2728 | 1615 | Pfam | Helicase conserved C-terminal domain | 391 | 497 | IPR001650 | - | |
Apr9g2728 | 1615 | SMART | ultradead3 | 29 | 236 | IPR014001 | - | |
Apr9g2728 | 1615 | Gene3D | Dicer dimerisation domain | 559 | 654 | IPR038248 | - | |
Apr9g2728 | 1615 | SUPERFAMILY | PAZ domain | 852 | 958 | IPR036085 | GO:0005515 | |
Apr9g2728 | 1615 | PANTHER | DICER-LIKE PROTEIN 4 | 29 | 1609 | - | - | |
Apr9g2728 | 1615 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 379 | 542 | IPR001650 | - | |
Apr9g2728 | 1615 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1368 | 1434 | IPR014720 | - | |
Apr9g2728 | 1615 | SMART | PAZ_2_a_3 | 836 | 986 | IPR003100 | GO:0005515 | |
Apr9g2728 | 1615 | SMART | DRBM_3 | 1532 | 1606 | IPR014720 | - | |
Apr9g2728 | 1615 | SMART | DRBM_3 | 1369 | 1433 | IPR014720 | - | |
Apr9g2728 | 1615 | CDD | RIBOc | 1213 | 1363 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Gene3D | paz domain | 852 | 958 | - | - | |
Apr9g2728 | 1615 | Gene3D | Ribonuclease III domain | 1195 | 1363 | IPR036389 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | CDD | RIBOc | 1010 | 1166 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | SUPERFAMILY | RNase III domain-like | 1196 | 1360 | IPR036389 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Pfam | double strand RNA binding domain from DEAD END PROTEIN 1 | 1532 | 1606 | - | - | |
Apr9g2728 | 1615 | Gene3D | Ribonuclease III domain | 1005 | 1167 | IPR036389 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Hamap | Ribonuclease 3 [rnc]. | 1200 | 1429 | IPR011907 | GO:0003723|GO:0004525|GO:0006364 | |
Apr9g2728 | 1615 | Pfam | DEAD/DEAH box helicase | 35 | 199 | IPR011545 | GO:0003676|GO:0005524 | |
Apr9g2728 | 1615 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1531 | 1607 | IPR014720 | - | |
Apr9g2728 | 1615 | SUPERFAMILY | dsRNA-binding domain-like | 1323 | 1432 | - | - | |
Apr9g2728 | 1615 | Gene3D | - | 372 | 534 | IPR027417 | - | |
Apr9g2728 | 1615 | Pfam | Ribonuclease III domain | 1232 | 1341 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Pfam | Ribonuclease III domain | 1025 | 1156 | IPR000999 | GO:0004525|GO:0006396 | |
Apr9g2728 | 1615 | Gene3D | - | 1538 | 1607 | - | - | |
Apr9g2728 | 1615 | CDD | DEXHc_dicer | 31 | 232 | - | - | |
Apr9g2728 | 1615 | PANTHER | DICER-RELATED | 29 | 1609 | - | - | |
Apr9g2728 | 1615 | Gene3D | - | 33 | 291 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr9g2728 | Apr-Chr9 | 34239705 | 34264289 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr9g2728 | 397 | 496 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.000 | 2.08e-07 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr9g2728 | K11592 | - | gmx:100818702 | 2715.64 |