Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2727 ATGTCAGGTTGGGACGAAGGAGCCGTCTATTACAGTGACCAAACGCACTCCTTGGACGACGGCACCGCTGTGGATGCCGCCACCGCCTCCAACCACTCTCTCCTCCAAAAGTTCAAGGAATTCATCCGAAACTTCGAGACCGATAACAATGTCTTCCCTTACAGAGAGAGCCTCCTTCACAACCCTAAGTTCCTCCTCATCGACATGGAAGATCTCGATGCCTTTGACCCCGACCTTCCCGCTAAACTCCGTTCTTCCCCCGCCGATTTCTTGCCATTGTTCGAGACCGCCGCGGCGCAGGTTCTGGTGAGTTTGAAGACGAAGGTGGCTGGGGATACCGGAGTTATGGAGGATCCGGTGACTGGCGATGTTCAGATTTTGCTTACCTCTAAGGAGGATCCAGTGTCGATGAGATCGCTAGGGTACATATCAAAGCTTGTTAAAATTGCTGGGATTACTATTGCTGCTTCAAGGACGAAGGCGAAGGCAACTTATGTAAACTTGATATGTAAAAATTGCAAGAAGGGGAAGCAAGTTCCGTGCCGGCCCGGACTTGGGGGAGCGATTGTTCCTCGATCTTGTGATCATATTCCTCAGCCTGGAGAAGAACCTTGCCCAATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACATTGAAGCTGCAAGAAAATCCAGAGGATGTTCCAACAGGAGAGCTTCCTAGAAATCTGCTTCTGTCTGTTGATCGTCATCTTGTTCAAACAGTAGTACCCGGCTCAAGATTGACTATCATTGGAATCTATAGCATCTACCAGGCCTCCAGCTCTTCTACATCCAACAAAGGAGCAGTTGCAGTTAGACAGCCGTATATTAGAGTTGTAGGAATAGAAGAAACAAACGAGGCCAAGTCCCGAGGTCCAGCTGCATTTACACCAGAAGAGATAGAAGAATTCAAAAAATTTGCTTCCGAACCTGACGCTTATAAAAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGACGATGTGAAAAGGGCCGTAGCCTGTCTTCTGTTTGGAGGATCAAGAAAGAATTTGCCAGATGGAGTCAAGTTAAGAGGTGATATCAATGTATTGCTTCTAGGAGATCCATCTACAGCAAAGTCACAGTTTCTGAAGTTTGTTGAAAAGACTGCTCCTGTTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGCCTCACAGCTTCTGTAATCAGAGATAGCAGCACACGTGAGTTTTATCTTGAAGGAGGGGCCATGGTCTTAGCAGATGGAGGTGTTGTTTGCATCGATGAGTTTGACAAGATGAGACCTGAAGATAGGGTTGCCATTCATGAGGCTATGGAACAGCAAACTATATCCATAGCCAAAGCCGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCTAACCCTCCATCAGGACGTTATGACGATCTTAAGACGGCACAGGATAACATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATAGTGAAAGACGTCAGAATGTACAGTCAAGACAAGATAATAGCCAGTCATATCATCAAGGTCCATGCATCAGCTAATGCAACCATGGGTGAGAGCAGGATATCTAAAGAAGAGAATTGGTTGAAGAGGTATTTACAATATTGTCGAACTGAATGCCACCCTCGTCTTTCGGAATCTGCAGCAGCATTGTTGCAGAATAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACGGGCGAAGCTGCAGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCGCTTGCAAAGATGAAACTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCAATAAGGCTTTTCACTGTGTCCACAATGGATGCAGCTAGGTCGGGAGTAAACCAACAAATAAATCTTACGCCTGATATGGCAAATGAGATAAAGCAAGCAGAAAGTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGTTGATTGATGACCTCAGCAGAATGGGGATGAACGAATCTATTGTGAGACGAGCTCTTGTAATCATGCACCAGAGAGATGAAGTAGAGTACAAGCGGGAAAGGCGTGTTATATTTAGGAAAGCTTGA 2187 0.4486 MSGWDEGAVYYSDQTHSLDDGTAVDAATASNHSLLQKFKEFIRNFETDNNVFPYRESLLHNPKFLLIDMEDLDAFDPDLPAKLRSSPADFLPLFETAAAQVLVSLKTKVAGDTGVMEDPVTGDVQILLTSKEDPVSMRSLGYISKLVKIAGITIAASRTKAKATYVNLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIIGIYSIYQASSSSTSNKGAVAVRQPYIRVVGIEETNEAKSRGPAAFTPEEIEEFKKFASEPDAYKNICSKIAPSIFGHDDVKRAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIASHIIKVHASANATMGESRISKEENWLKRYLQYCRTECHPRLSESAAALLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAARSGVNQQINLTPDMANEIKQAESQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALVIMHQRDEVEYKRERRVIFRKA* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2727 728 Pfam MCM P-loop domain 314 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 SUPERFAMILY Nucleic acid-binding proteins 37 292 IPR012340 -
Apr9g2727 728 ProSiteProfiles MCM family domain profile. 326 532 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 58 671 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 Pfam MCM N-terminal domain 36 107 IPR027925 -
Apr9g2727 728 Pfam MCM AAA-lid domain 554 643 IPR041562 -
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 367 382 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 468 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 SMART mcm 133 645 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr9g2727 728 Gene3D - 307 662 IPR027417 -
Apr9g2727 728 ProSitePatterns MCM family signature. 435 443 IPR018525 GO:0003677|GO:0005524|GO:0006260
Apr9g2727 728 CDD MCM5 329 643 - -
Apr9g2727 728 Gene3D - 142 270 IPR012340 -
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 136 151 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 162 174 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 286 298 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 562 577 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Apr9g2727 728 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 638 655 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Apr9g2727 728 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 58 671 - -
Apr9g2727 728 Pfam MCM OB domain 142 270 IPR033762 -
Apr9g2727 728 Coils Coil 575 595 - -
Apr9g2727 728 Gene3D - 162 220 - -
Apr9g2727 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 644 IPR027417 -
Apr9g2727 728 Gene3D - 30 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2727 Apr-Chr9 34232363 34237676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2727 1 728 Core DNA Replication Machinery Family AT2G07690 80.082 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2727 K02209 - gmx:100779483 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2727 9 34232363 34237676 Apr9g2727 9 34232363 34237676 ECH