Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2726 ATGGCGCCTCAGAAACTGACGGAGTACGAACGCAAGCGACTCGACAACATTCGCCGCAACCATGAAATGATCGCTGCCCTCAAAATCCATTCCAAAGCCACTCAACTTTCCAAGCGTTCGTCAAGTGTCGCAAACAAATCATACTCACTGAAATCAGAAAAGAAGGCCAAAATTGAAACCCCAATCGTGATTAGGCGTTCCCTGCGAACAAGGGGCATTCCACCCGATTCCAAAGCCCTTCACTCAGATACTGTCACTCTCACTCACTCATCCCCAACCAAAACCCTAACTTTGGGTCCTCTTTCCATGGTTGATGCTCAAGATGGTACTCACTGTCATCGCTCCTTCGTTGAATCACTTGTGAGTATGGCCCAAGAGGATACCTCTCCAGAACAATTGGTTAGTGGCAAGGGTGAAAAAAAAGGGAACAATGAGGCTTTCCTTGACTTGGAAAGGGAATCTTTGTCTTTGGATCCTGAGAATATAGCACGGGTTGTTCCTGGAAGGATAACGAATGTGCGATTTTTCCCTTCCAGTAGCGTGAAAATGATTATGGCGGGTAACAAGCTTGGGAATATTGGGTTTTGGAATGTTGGAGAAAGTGATGTTTATTTATACCGTCCCCACCGAGCTCCCATTTCTGGGATCTTGGTTCAATCACATTCCTTGTCCAAGATATATACATCATGTTATGATGGGTTTGTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTTGTGCTTGATAGTGATGAAACTATATATTCTCTTTCTCAACCAACAAATGAGGCAAACTGCCTGTATTTTGGTGAAGGTGGTGGAGGTTTGACTGTTTGGGATAACAGGATTGGAAAACGTTCGTCCCAGTGGGTTTTGCATGAAAGTAGGATTAATACAATAGATTTCAACAGCAAAAACCCTCACATTGTCGCTACTAGTTCCTCTGATGGAACTGCCTGTACCTGGGACTTTAGATATATCGATGGGGATAAGCTCACAGCCTTGAGGACATTTACCCACAAAAGAGCTGTGCAATCTGCTTACTTCTCTCCATCTGGGTGTAGCCTGGCAACTACAAGCATGGACGATACAATTGGTATTTACAGTGGAGTTAACTTGGAGGATGCAGTCACTGTTGATCATAATAATCAGACTGGCAGATGGCTTTCTTCATTCAGAGCAAAATGGGGTTGGGATGACTCATATCTCTTCGTCGGAAATATGAAAAGAGGAGTTGATGTTGTTTCGGCAGTTCGAAGGAGAATTGTTAAGACTCTACAAAGTCCACACATTTCTGCGATTCCGTGCAGATTCGATACACACTCTCATGAGCTTGGGATGCTAGCAGGAGCTACTAGTGGGGGCCAGGTCTATATTTGGACGTCGCGCTAG 1395 0.4459 MAPQKLTEYERKRLDNIRRNHEMIAALKIHSKATQLSKRSSSVANKSYSLKSEKKAKIETPIVIRRSLRTRGIPPDSKALHSDTVTLTHSSPTKTLTLGPLSMVDAQDGTHCHRSFVESLVSMAQEDTSPEQLVSGKGEKKGNNEAFLDLERESLSLDPENIARVVPGRITNVRFFPSSSVKMIMAGNKLGNIGFWNVGESDVYLYRPHRAPISGILVQSHSLSKIYTSCYDGFVRLMDAEKEIFDLVLDSDETIYSLSQPTNEANCLYFGEGGGGLTVWDNRIGKRSSQWVLHESRINTIDFNSKNPHIVATSSSDGTACTWDFRYIDGDKLTALRTFTHKRAVQSAYFSPSGCSLATTSMDDTIGIYSGVNLEDAVTVDHNNQTGRWLSSFRAKWGWDDSYLFVGNMKRGVDVVSAVRRRIVKTLQSPHISAIPCRFDTHSHELGMLAGATSGGQVYIWTSR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2726 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 326 IPR001680 GO:0005515
Apr9g2726 464 SMART WD40_4 284 324 IPR001680 GO:0005515
Apr9g2726 464 SMART WD40_4 199 239 IPR001680 GO:0005515
Apr9g2726 464 SMART WD40_4 332 370 IPR001680 GO:0005515
Apr9g2726 464 SMART WD40_4 156 197 IPR001680 GO:0005515
Apr9g2726 464 PANTHER WD REPEAT-CONTAINING PROTEIN 76 1 463 IPR033052 GO:0006974
Apr9g2726 464 Gene3D - 161 464 IPR015943 GO:0005515
Apr9g2726 464 PANTHER UNCHARACTERIZED 1 463 - -
Apr9g2726 464 SUPERFAMILY WD40 repeat-like 165 461 IPR036322 GO:0005515
Apr9g2726 464 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2726 169 415 U-box Gene Family AT1G04510 23.954 5.09e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2726 K24755 - gmx:100778960 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2726 9 34227789 34230451 Apr9g2726 9 34227789 34230451 ECH