Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2717 ATGATGGTGGGAAACGGTTTGGTGAATGATGATGTCGCCGGCGACCGTTTTCCAGTGGGTATGCGTGTTCTTGCCGTTGATGACGACCGAACTTGTCTCAAAGTGTTGGAGAACCTACTTCGCCAATGCAAGTATAATGTTACTACAACCACTCAGTCAATTAAGGCGCTAGAAATATTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGACATGGATGGGTTTAAGCTCCTTGAGCTAGTGGGACTTGAAATGGACCTACCTGTTATCATGTTGTCAGGATATGGTGATAAAGAGAGGGTGATGAAAGGTGTTATGCATGGTGCATGTGACTATCTAATGAAACCGGTTCGAATTGAAGAGTTACAGAACATATGGCAACATGTAGTGCGAAGGAAGATTGATTGCAAGGATAAGACTAAGTTTGTAAATGAGGAGAAAGCCTGCAATATGGCTAGAGAAGGTAGTCAAGCCATTGCATCAGAAAATAATGCTGACCAGAATAAAAAACTGAGTCTTAAAAGGAAGGAACACAGTGAGGTTGAGGTAGAGGTAGAGGAAGATGATGATCAAGAGAATGAGGAACCATTAAATCAGAAGAAGCCTCGTTTAGTTTGGGCCGCTGAGTTGCATAGCAAATTTGTTGCTGCTGTTAATCAGCTGGGAATTGATAAGGCATTCCCCAAGAGAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAACGTAGCAAGCCATCTGCAGAAATACAGACTGAGTCTCAAAAAGCCAACTCAACAGGCTAACATGGTTGTTGCATTGGGTAGTAGTGATCCTTACCTGCAGATGGGTTCATTAGAAGGATATGTAGATTTTTGCACTTCATCTAGATCAGGAAGAATGCTAAGCACCACACTACCATCATACGCATCTGGTGGAATGTTTCACAGGCTAAACACCCCATCTGGCTTGAACATGAGAGGACTTACTTCTTCTGCACTCGTTCGGCCTGTTCGGTCTCAAAACATTAACAGCAGCTCCGTAGAAACACTTGGAAACATGCAACAGTCCATGTTTTCTGCAAAACAGACCTCAAATTTATTACAAGCCATTCCAACATCAATTGAGGTTAACCAATTTCAGCAAAACAACTGTACAACTGGTATTAGGAAGTCAAGTCCAATTGATGGTTCCAGTGGATTTACAACAGTTTCCTGTGGTTTCTCAGACAGTAGAACTAATGTTAGTAATGCAAATAATTCTCTACCTGGCCTCTCAAATAATCATTTACTATTGCAAGGAAATTCCCAATCAACACACAATTCAAAAGCCTTCAGAAACCACTCTTCTCTTGGAGCTGCTTCTGTGAACACACAATCTTTTGACCCTGGCATCTGTAGTTCCTCCAAGTTTTCTGTCAATGCTTCTACAGTCAGTGAGGTTTTCAATAATGATCAACTACCTCAAAATAACTTAAACTTTTCATCATCCACTTTTCATAGTGGGAACAGTCCAGTTGATTTTTCTTCCACTAGTGCTATTGATGTTCCTTTGGAGGATGCTAGAGGTAAGCTGCAATACCAAGAAGGCTTACTTGGGAATATCTTAATGGCTTCATGTTACACTCAGCATCAAAGCTGGGAAGCAGATAAGGTGGTTTCCAACAAAGACACTACTTCTACCATAAATTCTCTTGTTTCTCCTAATGGAGACACAATGTCCTTGGGGCATAGTTTAGGCCAAAATAATATTGTTTGCAGCAAGAGAATTGATGCACCTTTTGTTGGCCAACTGAATGGGGTTAATCCATCAATCACACAGTCCATTGAAGAGGAGAAACTCTATTCAATGAAGTCAAATGATGCCTCCGATTTGCAGCAAATGAAGTCCCAAGAAGGACTCATTCAGAATAGTTTTGGATCCTTGGATGACATAATGAGTGAAATTGTCAAACTGGATCAAAATGCGATGATGTTGATTGATGCAGAAATGGAATTTGATGCTTACCCTGTTGGATCATGCTTTTGA 2034 0.4076 MMVGNGLVNDDVAGDRFPVGMRVLAVDDDRTCLKVLENLLRQCKYNVTTTTQSIKALEILRKNRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGYGDKERVMKGVMHGACDYLMKPVRIEELQNIWQHVVRRKIDCKDKTKFVNEEKACNMAREGSQAIASENNADQNKKLSLKRKEHSEVEVEVEEDDDQENEEPLNQKKPRLVWAAELHSKFVAAVNQLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLSLKKPTQQANMVVALGSSDPYLQMGSLEGYVDFCTSSRSGRMLSTTLPSYASGGMFHRLNTPSGLNMRGLTSSALVRPVRSQNINSSSVETLGNMQQSMFSAKQTSNLLQAIPTSIEVNQFQQNNCTTGIRKSSPIDGSSGFTTVSCGFSDSRTNVSNANNSLPGLSNNHLLLQGNSQSTHNSKAFRNHSSLGAASVNTQSFDPGICSSSKFSVNASTVSEVFNNDQLPQNNLNFSSSTFHSGNSPVDFSSTSAIDVPLEDARGKLQYQEGLLGNILMASCYTQHQSWEADKVVSNKDTTSTINSLVSPNGDTMSLGHSLGQNNIVCSKRIDAPFVGQLNGVNPSITQSIEEEKLYSMKSNDASDLQQMKSQEGLIQNSFGSLDDIMSEIVKLDQNAMMLIDAEMEFDAYPVGSCF* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2717 677 CDD REC_typeB_ARR-like 23 137 - -
Apr9g2717 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 655 - -
Apr9g2717 677 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Apr9g2717 677 SMART REC_2 21 133 IPR001789 GO:0000160
Apr9g2717 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
Apr9g2717 677 Gene3D - 205 265 - -
Apr9g2717 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 264 IPR017930 -
Apr9g2717 677 PIRSF RR_ARR_type-B 4 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Apr9g2717 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 655 IPR045279 GO:0009736
Apr9g2717 677 Pfam Myb-like DNA-binding domain 212 260 IPR001005 -
Apr9g2717 677 SUPERFAMILY Homeodomain-like 206 265 IPR009057 -
Apr9g2717 677 MobiDBLite consensus disorder prediction 175 189 - -
Apr9g2717 677 MobiDBLite consensus disorder prediction 162 205 - -
Apr9g2717 677 Gene3D - 20 156 - -
Apr9g2717 677 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Apr9g2717 677 SUPERFAMILY CheY-like 20 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2717 Apr-Chr9 34158177 34161387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2717 13 441 Response Regulator Gene Family AT2G25180 48.148 4.41e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr9g2717 Response_reg 1.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2717 K14491 - gmx:100803040 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2717 9 34158177 34161387 Apr9g2717 9 34158177 34161387 ECH