Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2708 ATGCAGCCTTGTAGCAGAGAAATGCAAGGCCTTAACAACACTATTTTCAACTCTCAGATCCAATTCGACCCTTCTTCCAACGAAGATTTCCTCAAACAAATGCTCTCCAACGTTCCTTCTTCGTCATGGACCCTCGACCCTATCCCCAAGCCCTTATGGGACGCCAATTCCGATGAAACCACACCTGATAATGTCGTTTACCCCTACGACGAACACGCCAACTTGACCTCCAAGTTTCGGAACCAACAGATCACTGAAACCAAGGCTTCCGCTCTCATGCTCCACCACCACCTTCTCATGTCTTCCAATTCCTCCCTCTTCCCTATCCCCTCGCCCAACGACGCCGTTCAACCCTCCTCCTTCAAATCCCCTACTTCCGCTGGTGAGGGTTCCATTCAAGCTCTCTACAACGGCTTTTCTGGATCTCTCCAAGGCACACCACATCCCTCTTCTAACCAAACTCAGCATTTTCAACACCCTCAGGGGCAGAGTTTTGGAGCTTCGGGTTCAGGTGGGGGTGCTACCCCGGGTCAGCCGAAGCAGAGGGTTAGGGCTAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAGAGGTTACGGAGGGAGAGAATCGCAGAGAGAATGAAAGCCTTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAAGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCGGCTGTCGCCCCCCTTGTTGCTGACATGCCCTCTGAGGGAGGCGGTGACTGCGTTCAAGGCAAAGGCAACGGCAACGGTGCGACTCAGGCTCATCCCCGGAACTCAAACGGCAACCAAACGTGCTCAAACGACAGCCTGACCATGACGGAGCAACAGGTGGCAAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTTCAAGGCAAAGGTCTCTGCCTCATGCCCATTTCTCTCGCCACCGCCATCTCCACGGCCACGTGTCACACCAGGAACCCGTTGATCAACCCTGATGGCCCTTCCTCTCCCGGCATCTCCGCGTTGACCGTCCAGTCCGCTGCTGTCGTCAAAGACGCAGCCTCCGTTTCGAAGTCGTGA 1143 0.5459 MQPCSREMQGLNNTIFNSQIQFDPSSNEDFLKQMLSNVPSSSWTLDPIPKPLWDANSDETTPDNVVYPYDEHANLTSKFRNQQITETKASALMLHHHLLMSSNSSLFPIPSPNDAVQPSSFKSPTSAGEGSIQALYNGFSGSLQGTPHPSSNQTQHFQHPQGQSFGASGSGGGATPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMPSEGGGDCVQGKGNGNGATQAHPRNSNGNQTCSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINPDGPSSPGISALTVQSAAVVKDAASVSKS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2708 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Apr9g2708 380 Gene3D - 184 246 IPR036638 GO:0046983
Apr9g2708 380 PANTHER TRANSCRIPTION FACTOR BHLH69 21 351 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 276 298 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 273 298 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 137 199 - -
Apr9g2708 380 Pfam Helix-loop-helix DNA-binding domain 194 239 IPR011598 GO:0046983
Apr9g2708 380 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 351 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 110 129 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 137 175 - -
Apr9g2708 380 MobiDBLite consensus disorder prediction 185 199 - -
Apr9g2708 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 249 IPR036638 GO:0046983
Apr9g2708 380 SMART finulus 195 244 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2708 Apr-Chr9 34105920 34108910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2708 167 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 70.476 5.96e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g2708 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2708 - - pvu:PHAVU_003G157100g 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2708 9 34105920 34108910 Apr9g2708 9 34105920 34108910 ECH